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. 2014 Apr;24(4):697–707. doi: 10.1101/gr.159624.113

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© 2014 Miga et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 3.0 Unported), as described at http://creativecommons.org/licenses/by-nc/3.0/.

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Figure 2. — A complete array sequence database across centromeric regions. Monomer sequence identity across each monomer with average percent identity across a 10-bp window, with red color increasing to 100% as provided in the key. Transitions (green) and transversions (blue) relative to the consensus sequence are provided for each 10-bp window (where the sum of each paired transition frequency window and transversion frequency window is 1). Sites of single base-pair insertion (white tracks with dark-gray background) and deletion (dark-gray on light-gray background) are provided as observed in the monomer library. Junctions that describe insertions of RepeatMasker-identified transposable elements are shown in purple with numbers indicating read depth. Consensus links (>3000 read support) between individual monomers are shown in black, nonconsensus links describing rearrangements in the HOR repeat structure ordering are shown in shades of blue, with color intensity increasing with estimated copy number. Image was created using the Circos software (Krzywinski et al. 2009).