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. 2014 Mar 25;70(Pt 4):404–413. doi: 10.1107/S2053230X14003422

Table 1. Data-collection and refinement statistics.

Values in parentheses are for the highest resolution shell.

  Na+ TtCutA1 TtCutA1 Na+ PhCutA1
Space group I23 P3221 P212121
Unit-cell parameters ()
a 83.00 71.75 93.09
b 83.00 71.75 124.25
c 83.00 100.40 50.46
= () 90 90 90
() 90 120 90
V M (3Da1) 1.85 2.16 1.73
Solvent content (%) 32.99 42.61 28.48
Subunits per asymmetric unit 1 3 6
Data collection
Temperature (K) 100 100 100
X-ray source BL44B2, SPring-8 Rigaku FR-D Rigaku FR-D
Detector MAR CCD 165 R-AXIS IV R-AXIS IV
Wavelength () 0.9 1.54178 1.54178
Resolution range () 401.70 (1.76170) 401.90 (1.991.90) 401.80 (1.88180)
Reflections (total/unique) 324012/10452 801788/23582 324593/53038
R merge (%) 7.3 (47.9) 8.2 (44.6) 6.0 (32.4)
I/(I) 51.3 (7.9) 17.5 (6.7) 20.7 (4.1)
Completeness (%) 99.8 (100) 95.4 (90.4) 96.3 (86.2)
Refinement statistics
No. of protein atoms 819 2462 5250
No. of water atoms 84 386 688
Bound metal atoms Na1, Na2   Na1
Reflections (working set/test set) 10452/544 23009/1116 53038/2691
R work /R free § 0.23/0.25 0.19/0.23 0.19/0.23
R.m.s. deviations from ideal values
Bond lengths () 0.005 0.006 0.005
Bond angles () 1.3 1.4 1.2
B factors (2)
Wilson plot 19.80 20.10 23.70
Average 27.70 28.65 26.67
Protein atoms 24.6 26.2 26.1
Water atoms 42.0 43.8 42.5
Ramachandran plot (%)
Most favoured 93.5 93.8 93.5
Additionally allowed 6.5 5.8 6.5
Generously allowed 0 0.4 0.0
PDB code 1nza 1v6h 4nyo

R merge = Inline graphic Inline graphic, where Ii(hkl) and I(hkl) are the observed intensity of measurement i and the mean intensity of the reflection with indices hkl, respectively.

R work = Inline graphic Inline graphic, where F obs and F calc are the observed and calculated structure factors, respectively.

§

R free is the R work calculated for a subset of 5% of the reflections that were omitted from refinement.