Table 1. Data-collection and refinement statistics.
Values in parentheses are for the highest resolution shell.
| Na+ TtCutA1 | TtCutA1 | Na+ PhCutA1 | |
|---|---|---|---|
| Space group | I23 | P3221 | P212121 |
| Unit-cell parameters () | |||
| a | 83.00 | 71.75 | 93.09 |
| b | 83.00 | 71.75 | 124.25 |
| c | 83.00 | 100.40 | 50.46 |
| = () | 90 | 90 | 90 |
| () | 90 | 120 | 90 |
| V M (3Da1) | 1.85 | 2.16 | 1.73 |
| Solvent content (%) | 32.99 | 42.61 | 28.48 |
| Subunits per asymmetric unit | 1 | 3 | 6 |
| Data collection | |||
| Temperature (K) | 100 | 100 | 100 |
| X-ray source | BL44B2, SPring-8 | Rigaku FR-D | Rigaku FR-D |
| Detector | MAR CCD 165 | R-AXIS IV | R-AXIS IV |
| Wavelength () | 0.9 | 1.54178 | 1.54178 |
| Resolution range () | 401.70 (1.76170) | 401.90 (1.991.90) | 401.80 (1.88180) |
| Reflections (total/unique) | 324012/10452 | 801788/23582 | 324593/53038 |
| R merge † (%) | 7.3 (47.9) | 8.2 (44.6) | 6.0 (32.4) |
| I/(I) | 51.3 (7.9) | 17.5 (6.7) | 20.7 (4.1) |
| Completeness (%) | 99.8 (100) | 95.4 (90.4) | 96.3 (86.2) |
| Refinement statistics | |||
| No. of protein atoms | 819 | 2462 | 5250 |
| No. of water atoms | 84 | 386 | 688 |
| Bound metal atoms | Na1, Na2 | Na1 | |
| Reflections (working set/test set) | 10452/544 | 23009/1116 | 53038/2691 |
| R work ‡/R free § | 0.23/0.25 | 0.19/0.23 | 0.19/0.23 |
| R.m.s. deviations from ideal values | |||
| Bond lengths () | 0.005 | 0.006 | 0.005 |
| Bond angles () | 1.3 | 1.4 | 1.2 |
| B factors (2) | |||
| Wilson plot | 19.80 | 20.10 | 23.70 |
| Average | 27.70 | 28.65 | 26.67 |
| Protein atoms | 24.6 | 26.2 | 26.1 |
| Water atoms | 42.0 | 43.8 | 42.5 |
| Ramachandran plot (%) | |||
| Most favoured | 93.5 | 93.8 | 93.5 |
| Additionally allowed | 6.5 | 5.8 | 6.5 |
| Generously allowed | 0 | 0.4 | 0.0 |
| PDB code | 1nza | 1v6h | 4nyo |
R
merge =
, where Ii(hkl) and I(hkl) are the observed intensity of measurement i and the mean intensity of the reflection with indices hkl, respectively.
R
work =
, where F
obs and F
calc are the observed and calculated structure factors, respectively.
R free is the R work calculated for a subset of 5% of the reflections that were omitted from refinement.