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. 2014 Apr 4;9(4):e93818. doi: 10.1371/journal.pone.0093818

Table 2. Primers used for strand-specific RT-PCR in this study.

Transcript to be detected Sequence (5′––>3′) RT-PCR* Direction cDNA (bp)**
CXCL1 mRNA GCCAAGCCACAGGGGCGCCCGT PCR Forward 231
ACTTGGGGACACCCTTTAGCATC PCR Reverse
GAPDH mRNA CCCATCACCATCTTCCAGGAGCGAG PCR Forward 285
GTTGTCATGGATGACCTTGGCCAGG PCR Reverse
IL-23A mRNA CAAGGACAACAGCCAGTTCTGTT PCR Forward 176
GGTGATCCTCTGGCTGGAGGAGC PCR Reverse
iNOS mRNA CCAACCTGCAGGTCTTCGATG PCR Forward 257
GTCGATGCACAACTGGGTGAAC PCR Reverse
iNOS asRNA# TGCCCCTCCCCCACATTCTCT RT Forward
ACCAGGAGGCGCCATCCCGCTGC PCR Forward 185
CTTGATCAAACACTCATTTTATTAAA PCR Reverse
NF-κB p65 mRNA ACCCCTTTCAAGTTCCCATAGA PCR Forward 262
ACCTCAATGTCTTCTTTCTGCAC PCR Reverse
NF-κB p50 mRNA CCTGCTCCTGGAGGGTGACGCC PCR Forward 254
GTATGTCAAATACCTGCCAGTTG PCR Reverse
TNF-α mRNA TCCCAACAAGGAGGAGAAGTTCC PCR Forward 275
GGCAGCCTTGTCCCTTGAAGAGA PCR Reverse

*The oligo(dT) primer was used for reverse transcription (RT) to synthesize the complementary DNAs (cDNAs) for each mRNA.

**The size of the cDNA fragment amplified by each pair of polymerase chain reaction (PCR) primers is shown in base pairs (bp).

#

A sense primer was used for the reverse transcription of the iNOS antisense transcript (asRNA).

CXCL1, chemokine (C-X-C motif) ligand 1; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; IL-23A, interleukin 23, α subunit p19; iNOS, inducible nitric oxide synthase; NF-κB, nuclear factor κB; TNF-α, tumor necrosis factor α.