Table 1.
Results from equine GWAS.
Identified genes and research methods in horses are outlined by paper.
| Author(s) | Year | Journal | Population size | Number of SNP markers | Map Length | Equine SNP location | Corresponding genes | Additional genes from refinement studies |
|---|---|---|---|---|---|---|---|---|
| Corbin et al. | 2012 | Mamm Genome | 330 | 40,180 | All autosomes | Chr 3 at 88.49 cM | - | - |
| Dierks et al. | 2007 | Mamm Genome | 104 | 260 | All autosomes | Chr 2 at 22.00–43.41 cM | Matrilin 1 (MATN1) | Neurochondrin (NCDN), Ficolin3 (FCN3), and Mitochondrial trans-2-enoyl CoA reductase (MECR) |
| Chr 4 at 7.70–24.30 cM | Laminin (LAMB1) | Hyaluronogluco saminidase (HYAL) family | ||||||
| Chr 5 at 79.30 cM | Solute carrier family 35 member D1 (SLC35D1) | Collage type XXIV α1 (COL24A1) | ||||||
| Chr 16 at 33.00–45.00 cM | Parathyroid hormone receptor (PTH1R) | - | ||||||
| Chr 18 at 74.94–82.25 cM* | - | Parathyroid hormone 2 receptor (PTH2R) | ||||||
| Lykkjen et al. | 2010 | Anim Genet | 162 | 41,170 | All autosomes | Chr 1 at 139 cM | - | - |
| Chr 3 at 113 cM | - | - | ||||||
| Chr 5 at 42, 77, and 79 cM | Chloride channel, calcium activated, family member 4 (CLCA4); Collagen type XXIV α1 (COL24A1) | - | ||||||
| Chr 10 at 80 cM | LOC10007351 | - | ||||||
| Chr 18 at 59 cM | - | - | ||||||
| Chr 28 at 43 cM | TBC1 domain family member 22A (TBC1D22A) | - | ||||||
| Orr et al. | 2012 | Anim Genet | 201 | 45,586 | All autosomes | Chr 3 at 105 cM | - | - |
| Chr 10 at 48 cM | - | - | ||||||
| Chr 16 at 47 cM | - | - | ||||||
| Chr 21 at 11 cM | - | - | ||||||
| Chr 31 at 22 cM | - | - | ||||||
| Teyssedre et al. | 2012 | J AnimSci | 525 | 41,249 | All autosomes | Chr 3 at 105 cM | - | - |
| Chr 13 at 9 cM | - | - | ||||||
| Chr 14 at 73 cM | - | - | ||||||
| Chr 15 at 87 cM | - | - | ||||||
| Wittwer et al. | 2007 | Anim Genet | 117 | 157 | All autosomes and X-chr | Chr 1 at 150.0–194.2 cM | lectin, galactoside-binding soluble, 3 (LGALS3) | - |
| Chr 4 at 7.8–38.0 cM | Calcitonin gene-related peptide-receptor component protein (RCP9); Calneuron 1 (CALN1) | - | ||||||
| Chr 4 at 70.0 cM | Interleukin 6 (IL6) | Acyloxyacyl hydrolase (AOAH) | ||||||
| Chr 18 at 45.9–87.6 cM | Collagen type III α1 (COL3A1); Collagen type V α2 (COL5A2); Frizzled-related protein (FRZB) | Xin actin-binding repeat containing 2 (XIRP2) | ||||||
| Chr 25 at 30.1 cM | Collagen type V α1 (COL5A1); Collagen XXVII α1 (COL27A1) | - |