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. 2014 Jan 28;54(2):601–612. doi: 10.1021/ci400707h

Table 2. Distance Criteria Used in Defining Specific Interactions between Drug and hERG Model Pore Residues in Low Energy Score Docked Poses.

interaction distance criteria
parallel π–π ring centers within 4.5 Å
T-shaped π–π aromatic H – ring center distance within 4 Å
cation-π protonated N or adjacent CH within 4 Å of aromatic ring center
H-bond OH-X or NH-X within 2.5 Å (X is H-bond acceptor)
cation in K+ site protonated N atom within 3 Å of cavity K+ site