TABLE 1.
Structure PDB entry | Protein(s) and organism | Number of subunits in the AU | Detailed description of AU | Detailed co-factors description | Nomenclature of the PII trimer in this paper | Nomenclature of individual effector sites in this paper | Resolution (Å) | Reference |
---|---|---|---|---|---|---|---|---|
4C3L | PII from | One monomer | None | PIINCI | 1.6 | This work | ||
S. elongatus | ||||||||
4C3M | PII from | One trimer | None | PIINCII | 2.2 | This work | ||
S. elongatus | ||||||||
4C3K | PII from | Two trimers | PIIADP | 3.1 | This work | |||
S. elongatus | ||||||||
Trimer I | One ADP | PIIADP1 | PIIADP1-S1 | |||||
Trimer II | Three ADP | PIIADP3 | PIIADP3-S1 | |||||
PIIADP3-S2 | ||||||||
PIIADP3-S3 | ||||||||
2XZW | PII from S. elongatus | Three trimers | Trimer I | Three ATP | PIIOG1 | PIIOG1-S1 | 1.95 | (11) |
One Mg2+ | PIIOG1-S2 | |||||||
One 2-OG | PIIOG1-S3 | |||||||
Trimer II | Three ATP | PIIOG2 | PIIOG2-S1 | |||||
Two Mg2+ | PIIOG2-S2 | |||||||
Two 2-OG | PIIOG2-S3 | |||||||
Trimer III | Three ATP | PIIOG3 | PIIOG3-S1 | |||||
Three Mg2+ | PIIOG3-S2 | |||||||
Three 2-OG | PIIOG3-S3 | |||||||
2XUL | PII from S. elongatus | Two identical trimers | Three ATP | PIIOGex | 2.2 | (11) | ||
Three Mg2+ | ||||||||
Three 2-OG | ||||||||
2XBP | PII from S. elongatus (I86N mutant) | One monomer | One ATP | 1.2 | (9) | |||
One Mg2+ | ||||||||
4AFF | PII from S. elongatus (I86N mutant) | One monomer | One ATP | 1.05 | (31) | |||
One Mg2+ | ||||||||
One citrate | ||||||||
1QY7 | PII from S. elongatus (S49A mutant) | One trimer | None | 2.0 | (6) | |||
2J9D | GlnK1 from M. jannashii | Four trimers | Trimer I Trimer II Trimer III Trimer IV |
One ADP One AMP One ADP Two ADP |
2.1 | (42) | ||
1V9O | PII from T. thermophilus | One trimer | Three ADP | (8) | ||||
3TA1 | PII from A, fulgidus | One trimer | Three ADP | 1.9 | (30) | |||
3NCR | PII from A. fulgidus | One trimer | Three ADP | 1.44 | (41) | |||
2XG8 | PII/PipX from S. elongatus | One trimeric complex | None | 3.2 | (24) | |||
3N5B | PII/PipX from Nostoc sp. | One monomeric complex | ADP | 1.9 | (48) | |||
2V5H | PII/NAGK from S. elongatus | One NAGK hexamer two PII trimers | N-Acetyl-l-glutamate (bound to NAGK) | 2.75 | (46) |