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. 2014 Feb 11;289(13):8960–8972. doi: 10.1074/jbc.M113.536557

TABLE 1.

Overview of structural data used in this work

AU, asymmetric unit.

Structure PDB entry Protein(s) and organism Number of subunits in the AU Detailed description of AU Detailed co-factors description Nomenclature of the PII trimer in this paper Nomenclature of individual effector sites in this paper Resolution (Å) Reference
4C3L PII from One monomer None PIINCI 1.6 This work
S. elongatus
4C3M PII from One trimer None PIINCII 2.2 This work
S. elongatus
4C3K PII from Two trimers PIIADP 3.1 This work
S. elongatus
Trimer I One ADP PIIADP1 PIIADP1-S1
Trimer II Three ADP PIIADP3 PIIADP3-S1
PIIADP3-S2
PIIADP3-S3
2XZW PII from S. elongatus Three trimers Trimer I Three ATP PIIOG1 PIIOG1-S1 1.95 (11)
One Mg2+ PIIOG1-S2
One 2-OG PIIOG1-S3
Trimer II Three ATP PIIOG2 PIIOG2-S1
Two Mg2+ PIIOG2-S2
Two 2-OG PIIOG2-S3
Trimer III Three ATP PIIOG3 PIIOG3-S1
Three Mg2+ PIIOG3-S2
Three 2-OG PIIOG3-S3
2XUL PII from S. elongatus Two identical trimers Three ATP PIIOGex 2.2 (11)
Three Mg2+
Three 2-OG
2XBP PII from S. elongatus (I86N mutant) One monomer One ATP 1.2 (9)
One Mg2+
4AFF PII from S. elongatus (I86N mutant) One monomer One ATP 1.05 (31)
One Mg2+
One citrate
1QY7 PII from S. elongatus (S49A mutant) One trimer None 2.0 (6)
2J9D GlnK1 from M. jannashii Four trimers Trimer I
Trimer II
Trimer III
Trimer IV
One ADP
One AMP
One ADP
Two ADP
2.1 (42)
1V9O PII from T. thermophilus One trimer Three ADP (8)
3TA1 PII from A, fulgidus One trimer Three ADP 1.9 (30)
3NCR PII from A. fulgidus One trimer Three ADP 1.44 (41)
2XG8 PII/PipX from S. elongatus One trimeric complex None 3.2 (24)
3N5B PII/PipX from Nostoc sp. One monomeric complex ADP 1.9 (48)
2V5H PII/NAGK from S. elongatus One NAGK hexamer two PII trimers N-Acetyl-l-glutamate (bound to NAGK) 2.75 (46)