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. 2014 Apr 8;9(4):e93248. doi: 10.1371/journal.pone.0093248

Figure 1. Demonstration of the MiClip algorithm.

Figure 1

(a) The inference results of MiClip on AGO CLIP clusters. At the bottom, “Strand” refers to the strands of clusters, “Enriched bins” shows whether a cluster contains enriched bins and “Binding sites” shows whether a cluster contains binding sites. This region covers part of the Tor1b gene. (b) A cartoon of the first HMM. At the bottom, “# Tag” refers to the rounded number of tags covering each bin and “State” shows whether a bin was inferred to be “enriched”. (c) A cartoon of the second HMM. At the bottom, “# Tag” refers to the number of total tags covering each base, “# Mut” refers to the number of mutant tags covering each base and “State” shows whether a base was inferred to be a “binding site”.