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. 2014 Apr 8;9(4):e94102. doi: 10.1371/journal.pone.0094102

Table 1. Results of an in silico transcription factor binding motif analysis.

Up-regulated genes Down-regulated genes
GZF1 CHCH
LXR PPARG
TATA HIF2A
IRF ZBTB
ZNF148 ELF ETS
ATF CREB AP1
TFE ZFX
GKLF FKLF
USF CNOT3
FOX RNF96
MYCMAX
AHRARNTHIF
E2F

Motives that were enriched in the 1000 bp promoter region upstream of up-regulated lipid related genes are shown on the left, binding motives that were enriched in promoters of down regulated genes on the right and motifs that were associated with up- and down-regulated genes at the bottom. Abbreviations (as used in the Transfac database): AHRARNTHIF: aryl hydrocarbon receptor/aryl hydrocarbon receptor nuclear translocator/hypoxia inducible factor, AP1: activator protein 1, AP2: activating protein 2, ATF CREB: activating transcription factor/cAMP response element binding, CHCH: Churchill, CNOT3: CCR4-NOT transcription complex subunit 3, E2F: E2F transcription factor, EGR: early growth response, ELF ETS: E74-like factor/E26 transformation-specific, FKLF: fetal β-like globin gene-activating Krüppel-like factor, FOX: forkhead box, GKLF: gut-enriched Krüppel-like factor, GZF1: GDNF-inducible zinc finger protein 1, HIF2A: hypoxia-inducible factor 2a, IRF: interferon regulatory factor, LXR: liver X receptor, MYCMAX: Myc/Max transcriptional complex, NFY: nuclear factor Y, p53: phosphoprotein p53, PPARG: peroxisome proliferator-activated receptor-gamma, RNF96: RING finger protein 96, SP1SP4: specificity protein 1 and 4, TATA: TATA box, TFE: Transcription Factor E (Family), USF: upstream transcription factor, ZBTB: zinc finger and BTB (broad complex, tramtrack, and bric-à-brac) domain-containing, ZFX: zinc finger X-chromosomal protein, ZNF148: zinc finger protein 148.