Table 3.
Genomic Location | Nucleotide Change | dbSNP | Associated Allele | Case, Control Ratio Counts (191, 96) | OR (95% CI) | p Value | r2(with rs13277113) |
---|---|---|---|---|---|---|---|
11,349,576 | C>A | rs2251056 | A | 321:61, 150:42 | 1.47 (0.95–2.28) | 0.0819 | 0.066 |
11,350,515 | C>T | rs76610494 | T | 8:374, 1:191 | 4.10 (0.51–32.92) | 0.1522 | 0.006 |
11,350,678 | T>C | rs2736344 | C | 329:53, 149:43 | 1.79 (1.15–2.80) | 0.0098 | 0.072 |
11,350,721 | C>G | rs9694294 | G | 323:59, 149:43 | 1.58 (1.02–2.45) | 0.0398 | 0.078 |
11,350,899 | T>C | rs1382567 | T | 199:183, 93:99 | 1.16 (0.82–1.64) | 0.4083 | 0.335 |
11,351,019 | G>A | rs4840568 | A | 125:257, 41:151 | 1.79 (1.29–2.69) | 0.0046 | 0.852 |
11,351,220 | A>C | rs1382568a | C | 121:261, 38:154 | 1.88 (1.24–2.85) | 0.0027 | 0.889 |
11,351,220 | A>G | rs1382568a | A | 200:182, 94:98 | 1.15 (0.81–1.62) | 0.4423 | 0.331 |
11,351,912 | C>T | rs922483 | T | 137:245, 43:149 | 1.94 (1.30–2.89) | 0.001 | 0.741 |
11,352,056 | A>G | rs2250788 | G | 320:62, 148:44 | 1.53 (0.99–2.37) | 0.0514 | 0.059 |
11,366,671 | C>T | rs115856097 | C | 274:108, 128:64 | 1.27 (0.87–1.84) | 0.2117 | 0.037 |
11,367,037 | G>C | rs4629826 | G | 358:24, 176:16 | 1.36 (0.70–2.62) | 0.3626 | 0.018 |
11,367,042 | C>T | rs76154097 | T | 55:327, 23:169 | 1.24 (0.73–2.08) | 0.4249 | 0.038 |
11,367,092 | T>C | rs2409782 | C | 91:291, 45:147 | 1.02 (0.68–1.54) | 0.9186 | 0.001 |
11,415,571 | A>G | rs4841557 | A | 158:222, 63:129 | 1.46 (1.01–2.10) | 0.042 | 0.187 |
11,415,596 | C>T | rs4841558 | C | 157:223, 63:129 | 1.44 (1.00–2.08) | 0.0484 | 0.181 |
11,418,385 | G>A | rs1042695 | A | 145:237, 59:133 | 1.38 (0.95–2.00) | 0.0878 | 0.179 |
11,418,765 | G>A | rs368588162 | A | 335:45, 157:35 | 1.66 (1.03–2.68) | 0.0375 | 0.019 |
11,418,766 | G>A | rs62490888 | G | 340:42, 157:35 | 1.81 (1.11–2.94) | 0.0164 | 0.015 |
11,418,772 | C>T | rs4841561 | T | 146:234, 59:133 | 1.41 (0.97–2.04) | 0.07 | 0.177 |
11,421,383 | C>T | rs10097015 | T | 160:222, 68:122 | 1.29 (0.90–1.85) | 0.1608 | 0.161 |
11,421,793 | C>T | rs1042689 | T | 144:238, 62:130 | 1.27 (0.88–1.83) | 0.2028 | 0.161 |
11,422,045 | G>A | rs1042701 | G | 213:169, 98:94 | 1.21 (0.86–1.71) | 0.2845 | 0.2 |
11,422,130 | T>C | rs7843987 | T | 212:170, 100:92 | 1.15 (0.81–1.62) | 0.4385 | 0.219 |
The two SNPs shown in italics (rs1382568∗ and rs922483) showed association with the loci identified from the GWAS (rs13277113, OR 1.39, p = 1 × 10−10, ref.1) with r2 > 0.5; ars1382568 is a tri-allelic SNP (A/C/G); the C allele was identified as a risk allele.