Table 2.
Running time for 100 random test sequences (T) and whole Swiss-Prot (SP) of 539 616 sequences
| Method | T (s) | SP (h) | Implementation note |
|---|---|---|---|
| Allerdictor | 32a | 0.1 | Standalone, implemented in Python |
| Allerdictor | 24 | 34.5 | Web server, implemented in Python, submission via Perl script |
| AlgPred-d | 114 | 174b | Web server, submission via Perl script |
| AllerHunter | 863 | 1318b | Web server, submission via Perl script |
| AllerHunter | 15c | 24c | BLAST, using AllerHunter data |
| APPEL | 3731 | 5700b | Web server, submission via Perl script |
| EVALLER | 4094 | 6255b | Web server, submission via Perl script |
| SORTALLER | 158 | 241b | Web server, submission via Perl script |
aIncluding time to read k-mer dictionary from disk. bEstimated time based on running time of 100 test sequences. cLower bound estimate (time required to run BLAST against the training sequences).