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. 2013 Dec 27;1:39. doi: 10.3389/fchem.2013.00039

Figure 5.

Figure 5

(A) Optimized geometry with bond lengths in angstroms of TSQM/MM for nitrile-based inhibitors in cathepsin K as calculated with QM(B3LYP/6-311G)/MM. (B) Potential energy landscape from reactants to products as obtained with QM/MM. Energies are in kcal mol−1 and contain ZPE corrections. Values in square brackets were obtained with electronic embedding included.