Table 2. Summary of results of multiple-QTL mapping (MQM) analyses of craniofacial phenotypes.

Trait	Scanone (IM) result: associated marker(s) (LOD value)	MQM result: associated marker(s) (LOD value)	Cofactor(s)	Epistatic interaction
R SO1+2 fusion	NYU27 (LOD 3.55)	NYU27 (LOD 3.69), 229B (LOD 4.61)	223C, 233D	223C and 233D (+)
R SO2 area	NYU27 (LOD 4.16), 229B  (LOD 3.7)	NYU27 (LOD 4.35), 229B (LOD 4.2), 209A (LOD 3.42)	110B, 111A, 227A, 222E, 131C, NYU25, 223C, 116B	110B and NYU25 (+)
L SO2 area	229B (LOD 4.04), NYU27 (LOD 3.38)	229B (LOD 4.31), 209A (LOD 3.30)	110B, 111A, 23C, 232C, 214F, NYU25	232C and 110B (−)
R SO3 area	55B (LOD 3.18), 229B (LOD 2.72)	55B (LOD 3.38), 229B (LOD 2.9)	119C, 111A, 131C, 213B, 23C, 229B, 223C, 26A	—
L SO3 area	55B (LOD 3.84), 229B (LOD 2.77)	55B (LOD 4.16), 229B (LOD 3.02)	218D, 206D, 55B, 229B, 223C, 131C	—
R SO3 no.	206A (LOD 3.83)	206A (LOD 4.06)	—	—
R SO4 area	223C (LOD 3.07)	229B (LOD 3.12)	218D, 223C	—
L SO4 area	229B (LOD 3.57)	229B (LOD 3.81)	131B, NYU53, 202E, 223C	—
L SO4+5 fusion	112A (LOD 2.6)	112A (LOD 2.79)	232D, 113B, 224E, NYU31	—
R SO5 area	214F (LOD 2.2)	214F (LOD 2.29)	214F, NYU53, 233D	—
L SO5 area	229B (LOD 2.52)	229B (LOD 2.88)	8B, 111A, 133B, 16C, 131C, 218B, 229B	—
Standard length	111A (LOD 2.15)	111A (LOD 2.69)	55B, 122B	—
Sex	214D (LOD 14.83)	214D (LOD 14.83)	214C, 6C, 122B	—