Table 1. Top 50 genes predicted to be targets of regulation by SD in the SAM and ORE genetic backgrounds.

Gene	PSAM	PORE	PDiff
nej	0.001	0.003	0.423
CG3795	0.001	0.001	0.043
5SrRNA-Psi:CR33371	0.001	0.001	0.39
Uch-L5R	0.001	0.004	0.001
cdi	0.002	0.001	0.001
5SrRNA:CR33434	0.001	0.001	0.048
CG14752	0.005	0.001	0.007
Apf	0.002	0.001	0.013
Muc14A	0.001	0.001	0.001
Muc12Ea	0.001	0.001	0.001
na	0.001	0.004	0.001
Cht6	0.001	0.001	0.038
PGRP-LB	0.001	0.001	0.031
CR43211	0.001	0.001	0.008
CG6084	0.002	0.006	0.148
Myo10A	0.003	0.002	0.103
5SrRNA:CR33370	0.002	0.002	0.11
5SrRNA:CR33377	0.002	0.002	0.072
CG32669	0.002	0.003	0.155
CG11180	0.002	0.002	0.03
feo	0.002	0.002	0.05
Hexo2	0.002	0.003	0.09
5SrRNA:CR33433	0.002	0.002	0.091
5SrRNA:CR33445	0.002	0.002	0.156
5SrRNA:CR33447	0.002	0.002	0.135
Trxr-1	0.002	0.003	0.009
rtv	0.005	0.002	0.002
ND75	0.002	0.002	0.006
Reg-2	0.007	0.002	0.005
CG42832	0.002	0.002	0.002
CG31907	0.004	0.002	0.009
CG16742	0.002	0.003	0.163
CG17287	0.002	0.005	0.116
Rcd6	0.004	0.002	0.017
Rab9Fb	0.004	0.002	0.06
CG13917	0.004	0.002	0.032
CG7530	0.007	0.003	0.001
CG14551	0.003	0.004	0.001
snoRNA:Me18S-G962	0.008	0.003	0.001
Bx	0.011	0.003	0.002
Trx-2	0.013	0.003	0.002
sofe	0.003	0.004	0.036
ush	0.004	0.003	0.019
5SrRNA:CR33372	0.003	0.003	0.132
5SrRNA:CR33448	0.003	0.003	0.137
5SrRNA:CR33435	0.003	0.003	0.041
5SrRNA:CR33450	0.003	0.004	0.19
CG17290	0.008	0.003	0.004
CG6481	0.003	0.005	0.073
CG13056	0.003	0.006	0.045

P_SAM, P_ORE: P-value for being a predicted SD-binding target in SAM and ORE, respectively. P_diff: P-value for differential SD binding affinity between the SAM and ORE backgrounds.