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Accuracy of ADMIXTURE and sNMF in the presence of related individuals. Shown are RMSEs between estimated Q matrices and a known matrix used to generate simulated data. Simulations mimicked the population structure of European populations of Arabidopsis thaliana. (A and B) Moderate levels of inbreeding, FIS = 25–50%. (C and D) Strong levels of inbreeding, FIS = 75–100%.
