Table 3. Statistical errors for ADMIXTURE and sNMF on simulated data sets.
Ancestry estimation | Dir(1, 1, 1) | Dir(0.5, 0.5, 0.5) | Dir(0.1, 0.1, 0.1) | Dir(0.2, 0.2, 0.05) | Dir(0.2, 0.2, 0.5) | Dir(0.05, 0.05, 0.01) |
---|---|---|---|---|---|---|
Q matrix | ||||||
ADMIXTURE | 0.023 | 0.012 | 0.004 | 0.006 | 0.010 | 0.003 |
sNMF α = 0 | 0.020 | 0.011 | 0.007 | 0.007 | 0.013 | 0.009 |
sNMF α = 100 | 0.024 | 0.014 | 0.006 | 0.006 | 0.014 | 0.006 |
G matrix | ||||||
ADMIXTURE | 0.029 | 0.022 | 0.016 | 0.022 | 0.022 | 0.022 |
sNMF α = 0 | 0.034 | 0.027 | 0.021 | 0.028 | 0.028 | 0.028 |
sNMF α = 100 | 0.034 | 0.027 | 0.021 | 0.028 | 0.028 | 0.028 |
Dir: Dirichlet distribution used to simulate “true” admixture coefficients, using three ancestral populations.