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. 2014 Feb 4;196(4):973–983. doi: 10.1534/genetics.113.160572

Table 3. Statistical errors for ADMIXTURE and sNMF on simulated data sets.

Ancestry estimation Dir(1, 1, 1) Dir(0.5, 0.5, 0.5) Dir(0.1, 0.1, 0.1) Dir(0.2, 0.2, 0.05) Dir(0.2, 0.2, 0.5) Dir(0.05, 0.05, 0.01)
Q matrix
 ADMIXTURE 0.023 0.012 0.004 0.006 0.010 0.003
 sNMF α = 0 0.020 0.011 0.007 0.007 0.013 0.009
 sNMF α = 100 0.024 0.014 0.006 0.006 0.014 0.006
G matrix
 ADMIXTURE 0.029 0.022 0.016 0.022 0.022 0.022
 sNMF α = 0 0.034 0.027 0.021 0.028 0.028 0.028
 sNMF α = 100 0.034 0.027 0.021 0.028 0.028 0.028

Dir: Dirichlet distribution used to simulate “true” admixture coefficients, using three ancestral populations.