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. 2014 Apr 10;9(4):e93758. doi: 10.1371/journal.pone.0093758

Table 1. Sequence data used to design real time RT-PCR assays.

Virus serotype Origin ORC reference number2 Seg-1 Acc. number Seg-2 Acc. number Seg-3 Acc. number
Reference strains 1
AHSV-1 Republic of South Africa RSArrah/01* KF446265 KF446274 KF446256
AHSV-2 Republic of South Africa RSArrah/02* KF446266 KF446275 KF446257
AHSV-3 Republic of South Africa RSArrah/03* KF446267 KF446276 KF446257
AHSV-4 Spain SPArrah/04* KF446268 KF446277 KF446259
AHSV-5 Republic of South Africa RSArrah/05* KF446269 KF446278 KF446260
AHSV-6 Republic of South Africa RSArrah/06* KF446270 KF446279 KF446261
AHSV-7 Kenya KENrrah/07* KF446271 KF446280 KF446262
AHSV-8 Republic of South Africa RSArrah/08* KF446272 KF446281 KF446263
AHSV-9 Pakistan PAKrrah/09* KF446273 KF446282 KF446264
Sequence data from international databases
AHSV-1 NC006021 FJ011107 FJ183364 AM883164 AY163329 FJ011108 AM883165 AM883166 FJ011109 EU303138
AHSV-2 FJ196584 AY163332 FJ196585 EU303139
AHSV-3 DQ868772 U01832 Z26316 EU303136 EU303135 EU303134 EU303133 EU303132 EU303140
AHSV-4 EU046574 DQ868773 U21956 EU303141 EU303137 D26572
AHSV-5 AY163331
AHSV-6 DQ868774 AF021235 EU303142 AF021236
AHSV-7 DQ118706 DQ118705 DQ118704 DQ118703 AY159954 AY159953 AY159952 AY159951 AY159950 AY159949 AY159948 AY159947 AY159946 AY159945 AY159944 AY159943 AY159942 AY159941 AY159940 AY163330
AHSV-8 DQ868775 AY163333 EU303143
AHSV-9 U94887 DQ868776 AF043926

*Isolates sequenced as part of this study.

1

Set of nine monotypic AHSV reference strains (Bachanek-Bankowska et al – in preparation).

2

Orbivirus reference collection (ORC), The Pirbright Institute.