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. 2014 Apr 10;9(4):e94651. doi: 10.1371/journal.pone.0094651

Figure 1. Boxplot comparisons of de novo assembled transcripts length distribution using Trinity, SOAPdenovo-trans and TransABySS software.

Figure 1

First column (ITAG2.3 CDS) indicates tomato full CDS transcriptome, 2nd column represents Trinity assembly using default k-mer set at 25. Third and 4th columns represent assembly generated with SOAPdenovo-trans (SOAP) with k-mers (K) set at 25 and 47, respectively. Last column represents assembly generated with Trans-ABySS (T.ABySS) using trans k-mer. Transcripts longer than 5,000 bp were not plotted.