TABLE IV.

SNPs With P-Value <0.1 in the Whole Sample and P-Values in Cases and Controls

Phenotype	Gene	SNP	All		Cases		Controls
			BETA	P-value	BETA	P-value	BETA	P-value
P3 amplitude	TCF4	rs17512836	−5.665	0.00017	−5.396	0.000826	−3.449	0.3998
	ANK3	rs10994397	−2.198	0.02012	−2.257	0.02476	−1.234	0.6029
	GABRB1	rs4279178	0.898	0.05099	0.814	0.1096	1.077	0.2623
	GLS	rs13000464	−0.881	0.05473	−1.242	0.0128	1.153	0.2554
	TCF4	rs9960767	−2.182	0.06468	−2.871	0.03951	−0.4752	0.8197
P3 latency	TCF4	rs17512836	56.34	0.00514	77.26	0.00231	−12.91	0.7321
	ODZ4	rs12576775	20.42	0.01622	20.28	0.06141	18.66	0.1508
	TCF4	rs9960767	34.42	0.03115	63.86	0.00362	−7.912	0.7096
	MIR137	rs1625579	15.93	0.05684	14.74	0.1679	10.44	0.401
	GLS	rs13000464	10.74	0.08435	18.41	0.02029	−14.84	0.1141
P2 amplitude	ANK3	rs10994397	−1.476	0.02206	−1.455	0.02023	−1.398	0.4478
	TCF4	rs9960767	−1.635	0.04105	−0.973	0.2593	−2.895	0.0985
	TCF4	rs17512836	−2.061	0.05103	−1.065	0.3182	−3.392	0.2868
	CNNM2	rs7914558	−0.574	0.09731	−0.163	0.6397	−1.323	0.1231
N1 amplitude	MIR137	rs1625579	−0.801	0.0218	−1.002	0.00877	−0.1329	0.8621
	CNNM2	rs7914558	0.523	0.06784	0.333	0.2908	1.339	0.0323
Sensory gating	CACNA1C	rs4765913	−10.7	0.02594	−19.19	0.00121	8.475	0.1926
	CNNM2	rs7914558	7.967	0.05355	7.928	0.1335	7.281	0.18
	GABRB1	rs4279178	−6.617	0.07895	−7.627	0.1175	−0.5587	0.9062
	CACNA1C	rs4765905	−6.642	0.08947	−11.78	0.01711	2.854	0.1926

Bold indicates statistically significant results after correction for multiple comparisons. Italic indicates P <0.05.