Table 1. SNPs used for the SNP-String Analysis.
Gene | Label | SNP‡ | Chromosome | Location | Distance* |
DRB1 | |||||
n1 | rs2239804_(G) | 6 | 32519501 | −63315.36 | |
n2 | rs7192_(T) | 6 | 32519624 | −63192.36 | |
n3 | rs2395182_(G) | 6 | 32521295 | −61521.36 | |
n4 | rs3129890_(C) | 6 | 32522251 | −60565.36 | |
n5 | rs9268832_(T) | 6 | 32535767 | −47049.36 | |
n6 | rs6903608_(C) | 6 | 32536263 | −46553.36 | |
n7 | rs2395185_(T) | 6 | 32541145 | −41671.36 | |
n8 | rs477515_(T) | 6 | 32677669 | 94852.64 | |
n9 | rs2516049_(G) | 6 | 32678378 | 95561.64 | |
n10 | rs556025_(A) | 6 | 32678858 | 96041.64 | |
n11 | rs2858870_(G) | 6 | 32680229 | 97412.64 | |
MMEL1 | |||||
n1 | rs2234167_(A) | 1 | 2522390 | −99877.36 | |
n2 | rs6667605_(T) | 1 | 2534942 | −87325.36 | |
n3 | rs734999_(T) | 1 | 2545378 | −76889.36 | |
n4 | rs3748816_(C) | 1 | 2558908 | −63359.36 | |
n5 | rs12138909_(T) | 1 | 2570900 | −51367.36 | |
n6 | rs11590198_(A) | 1 | 2584062 | −38205.36 | |
n7 | rs3890745_(G) | 1 | 2585786 | −36481.36 | |
n8 | rs4648499_(A) | 1 | 2722807 | 100539.64 | |
n9 | rs4648356_(A) | 1 | 2732322 | 110054.64 | |
n10 | rs2377041_(A) | 1 | 2736485 | 114217.64 | |
n11 | rs10909880_(C) | 1 | 2750961 | 128693.64 |
Nucleotide base (of the pair at each SNP), which is coded as having 0, 1, or 2 copies, is shown in parentheses.
*Distance from the center of each SNP-cluster. The DRB1cluster spans 160.7 kb and includes a gap of 136.5 kb between SNPs (n7) and (n8). The MMEL1 cluster spans 228.6 kb and includes a gap of 137.0 kb between SNPs (n7) and (n8).