Skip to main content
. 2014 Apr 11;9(4):e90034. doi: 10.1371/journal.pone.0090034

Table 1. SNPs used for the SNP-String Analysis.

Gene Label SNP Chromosome Location Distance*
DRB1
n1 rs2239804_(G) 6 32519501 −63315.36
n2 rs7192_(T) 6 32519624 −63192.36
n3 rs2395182_(G) 6 32521295 −61521.36
n4 rs3129890_(C) 6 32522251 −60565.36
n5 rs9268832_(T) 6 32535767 −47049.36
n6 rs6903608_(C) 6 32536263 −46553.36
n7 rs2395185_(T) 6 32541145 −41671.36
n8 rs477515_(T) 6 32677669 94852.64
n9 rs2516049_(G) 6 32678378 95561.64
n10 rs556025_(A) 6 32678858 96041.64
n11 rs2858870_(G) 6 32680229 97412.64
MMEL1
n1 rs2234167_(A) 1 2522390 −99877.36
n2 rs6667605_(T) 1 2534942 −87325.36
n3 rs734999_(T) 1 2545378 −76889.36
n4 rs3748816_(C) 1 2558908 −63359.36
n5 rs12138909_(T) 1 2570900 −51367.36
n6 rs11590198_(A) 1 2584062 −38205.36
n7 rs3890745_(G) 1 2585786 −36481.36
n8 rs4648499_(A) 1 2722807 100539.64
n9 rs4648356_(A) 1 2732322 110054.64
n10 rs2377041_(A) 1 2736485 114217.64
n11 rs10909880_(C) 1 2750961 128693.64

Nucleotide base (of the pair at each SNP), which is coded as having 0, 1, or 2 copies, is shown in parentheses.

*Distance from the center of each SNP-cluster. The DRB1cluster spans 160.7 kb and includes a gap of 136.5 kb between SNPs (n7) and (n8). The MMEL1 cluster spans 228.6 kb and includes a gap of 137.0 kb between SNPs (n7) and (n8).