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. 2014 Apr 7;5:134. doi: 10.3389/fmicb.2014.00134

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Copyright © 2014 Grötzinger, Alam, Ba Alawi, Bajic, Stingl and Eppinger.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Flowchart illustrating the PPM (profile pattern matching) algorithm, starting from an E.C. Number based proteins of interest (POI) list and a selected database subset, which may also be uploaded externally. Numbers refer to the example published here. Square brackets indicate number of genes at each step during the example analysis, specific restriction filters are described in normal brackets. The complete PPM algorithm is available at the INDIGO webpage including the scripts AutoTECNo and PPM Processor.