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. 2014 Feb 18;10(4):1788–1794. doi: 10.1021/ct4010917

Table 4. Accuracy of ΔGpol Estimated by CHA–GB and GB Based on Their Respective Optimal Atomic Radii (Table 3)a.

  small molecules
amino acid analogs
proteins
  GB CHA–GB GB CHA–GB GB CHA–GB
rmse 1.24 0.88 1.26 0.81 10.24 8.95
⟨err⟩ –0.53 –0.37 0.24 0.09 –6.12 –2.80
⟨|err|⟩ 0.93 0.63 0.90 0.64 7.79 7.63
r2 0.86 0.93 0.998 0.999 0.99 0.99
%(|err| > 2kBT) 30.6 14.9 25.0 16.7 84.2 89.5
rmse worst 5% 3.20 2.55 4.14 2.11 25.53 16.20
a

The accuracy is assessed relative to explicit solvent (TIP3P) ΔGpol (kcal/mol): root mean square error (rmse), mean error (⟨err⟩), mean absolute error ⟨|err|⟩, r2 correlation, percentage of molecules with absolute error >2kBT, and rmse of the 5% molecules with largest |err|.