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. 2014 Apr 14;9(4):e94168. doi: 10.1371/journal.pone.0094168

Table 1. HGDI values obtained in this study compared to global HGDI values obtained from published and personal results.

Locus HGDI (this study) Global HGDI*
Diversity Index (n) CI K max(pi) Diversity Index (n) CI K max(pi)
Panel 2B Bruce04 0.791 (77) 0.753–0.830 7 0.325 0.765 (507) 0.745–0.785 10 0.377
Bruce07 0.679 (77) 0.610–0.748 5 0.481 0.676 (507) 0.641–0.710 10 0.518
Bruce09 0.858 (77) 0.816–0.901 13 0.286 0.637 (507) 0.592–0.683 15 0.588
bruce16 0.865 (77) 0.829–0.901 10 0.273 0.838 (507) 0.828–0.849 11 0.245
bruce30 0.126 (77) 0.025–0.227 5 0.935 0.693 (507) 0.664–0.721 7 0.480
Panel 2A bruce18 0.034 (25) 0.000–0.098 2 0.983 0.582 (432) 0.541–0.624 7 0.595
bruce19 0.000 (25) 0.000–0.114 1 1.000 0.577 (432) 0.540–0.615 7 0.583
bruce21 0.000 (25) 0.000–0.114 1 1.000 0.009 (432) 0.000–0.022 2 0.995
Panel 1 Bruce06 0.000 (25) 0.000–0.114 1 1.000 0.466 (432) 0.442–0.490 2 0.632
Bruce08 0.000 (25) 0.000–0.114 1 1.000 0.085 (432) 0.049–0.121 4 0.956
bruce11 0.000 (25) 0.000–0.114 1 1.000 0.000 (432) 0.000–0.017 1 1.000
bruce12 0.000 (25) 0.000–0.114 1 1.000 0.093 (432) 0.056–0.131 3 0.951
bruce42 0.000 (25) 0.000–0.114 1 1.000 0.663 (432) 0.654–0.672 4 0.370
bruce43 0.000 (25) 0.000–0.114 1 1.000 0.504 (432) 0.479–0.529 4 0.595
bruce45 0.000 (25) 0.000–0.114 1 1.000 0.000 (432) 0.000–0.017 1 1.000
bruce55 0.000 (25) 0.000–0.114 1 1.000 0.466 (432) 0.442–0.490 2 0.632

HGDI: Hunter Gaston Diversity Index, which determines the variation of the number of repeats at each locus, and ranges from 0.0 (no diversity) to 1.0 (complete diversity); CI: Confidence Interval; K: Number of different repeats present at this locus in this sample set; max(pi): Proportion of strains having the most frequent repeat number at a given locus (range 0.0 to 1.0); n: strains number according to the considered locus; in bold: locus more variable for panel 2B.

*Global HGDI calculated from published [13], [15][20], [22][23] and personal results.