Table 1. HGDI values obtained in this study compared to global HGDI values obtained from published and personal results.
Locus | HGDI (this study) | Global HGDI* | |||||||
Diversity Index (n) | CI | K | max(pi) | Diversity Index (n) | CI | K | max(pi) | ||
Panel 2B | Bruce04 | 0.791 (77) | 0.753–0.830 | 7 | 0.325 | 0.765 (507) | 0.745–0.785 | 10 | 0.377 |
Bruce07 | 0.679 (77) | 0.610–0.748 | 5 | 0.481 | 0.676 (507) | 0.641–0.710 | 10 | 0.518 | |
Bruce09 | 0.858 (77) | 0.816–0.901 | 13 | 0.286 | 0.637 (507) | 0.592–0.683 | 15 | 0.588 | |
bruce16 | 0.865 (77) | 0.829–0.901 | 10 | 0.273 | 0.838 (507) | 0.828–0.849 | 11 | 0.245 | |
bruce30 | 0.126 (77) | 0.025–0.227 | 5 | 0.935 | 0.693 (507) | 0.664–0.721 | 7 | 0.480 | |
Panel 2A | bruce18 | 0.034 (25) | 0.000–0.098 | 2 | 0.983 | 0.582 (432) | 0.541–0.624 | 7 | 0.595 |
bruce19 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.577 (432) | 0.540–0.615 | 7 | 0.583 | |
bruce21 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.009 (432) | 0.000–0.022 | 2 | 0.995 | |
Panel 1 | Bruce06 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.466 (432) | 0.442–0.490 | 2 | 0.632 |
Bruce08 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.085 (432) | 0.049–0.121 | 4 | 0.956 | |
bruce11 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.000 (432) | 0.000–0.017 | 1 | 1.000 | |
bruce12 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.093 (432) | 0.056–0.131 | 3 | 0.951 | |
bruce42 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.663 (432) | 0.654–0.672 | 4 | 0.370 | |
bruce43 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.504 (432) | 0.479–0.529 | 4 | 0.595 | |
bruce45 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.000 (432) | 0.000–0.017 | 1 | 1.000 | |
bruce55 | 0.000 (25) | 0.000–0.114 | 1 | 1.000 | 0.466 (432) | 0.442–0.490 | 2 | 0.632 |
HGDI: Hunter Gaston Diversity Index, which determines the variation of the number of repeats at each locus, and ranges from 0.0 (no diversity) to 1.0 (complete diversity); CI: Confidence Interval; K: Number of different repeats present at this locus in this sample set; max(pi): Proportion of strains having the most frequent repeat number at a given locus (range 0.0 to 1.0); n: strains number according to the considered locus; in bold: locus more variable for panel 2B.