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. Author manuscript; available in PMC: 2014 Apr 15.
Published in final edited form as: J Periodontol. 2013 Jan 31;84(11):1606–1616. doi: 10.1902/jop.2013.120294

Table 1. Oligonucleotides used for bisulfite specific PCR and pyrosequencing.

CpG site (*) Included Details Sequences Annealing T (°C)
-244, -238 Forward 5′-TAGGTTTTGAGGGGTATGGG -3′ 62
Reverse 5′-[Biotin]TCAAAAATACCCCTCACACTCC -3′
Sequencer 5′-GTTAGTGGTTTAGAAGATTT-3′
-169, -163,
-161
Forward 5′-[Biotin]GAGTGTGAGGGGTATTTTTGATG -3′ 63
Reverse 5′-GCAACCATAATAAACCCTACACCTTC-3′
Sequencer 5′-AAACCCTACACCTTCTATCT -3′
-146, -119 Forward 5′-GAGGGGTATTTTTGATGTTTGTGT -3′ 61
Reverse 5′-[Biotin] CAACCAACCAAAAACTTCCTTAAT-3′
Sequencer 5′-TTTAGAGATGGAGAAGAAA-3′
-72, -49, -38 Forward 5′-GAGGGGTATTTTTGATGTTTGTGT-3′ 63
Reverse 5′-[Biotin]CCAACAACTACCTTTATATATCCC -3′
Sequencer 5′-TTATGGGTTTTTTTATTAAG-3′
*

CpG sites indicate nucleotide position in relation to transcription start (TSS).

“−” or “+”, indicates upstream or downstream of TSS, respectively.