Table 1.
Examples of gene ontology terms commonly associated with virulence identified in QPX transcriptome; F: molecular function, P: biological process
| Gene Ontology term | GO category | GO level | GO ID | Seqs no. |
|---|---|---|---|---|
|
Degradation of biopolymers hydrolase activity |
|
|
||
|
Hydrolase activity |
F |
3 |
GO:0016787 |
777 |
| Nuclease activity |
F |
5 |
GO:0004518 |
29 |
| Phosphatase activity |
F |
6 |
GO:0016791 |
27 |
| Lipase activity |
F |
5 |
GO:0016298 |
9 |
| Phospholipase activity |
F |
6 |
GO:0004620 |
4 |
| Chitinase activity |
F |
6 |
GO:0004568 |
3 |
| Glucosidase activity |
F |
6 |
GO:0015926 |
2 |
| Amylase activity |
F |
6 |
GO:0016160 |
1 |
| Galactosidase activity |
F |
6 |
GO:0015925 |
1 |
|
Peptidase activity |
F |
4 |
GO:0008233 |
203 |
| Metallopeptidase activity |
F |
6 |
GO:0008237 |
47 |
| Serine-type peptidase activity |
F |
5 |
GO:0008236 |
45 |
| Cysteine-type peptidase activity |
F |
6 |
GO:0008234 |
35 |
| Metalloendopeptidase activity |
F |
7 |
GO:0004222 |
30 |
| Aspartic-type endopeptidase activity |
F |
7 |
GO:0004190 |
10 |
| Threonine-type peptidase activity |
F |
6 |
GO:0070003 |
7 |
| Peptidase inhibitor activity |
F |
4 |
GO:0030414 |
9 |
|
Cell homeostasis and protection against oxidative stress |
|
|
||
|
Antioxidant activity |
F |
2 |
GO:0016209 |
17 |
| Peroxidase activity |
F |
3 |
GO:0004601 |
10 |
| Superoxide metabolic process |
P |
5 |
GO:0006801 |
5 |
| Catalase activity |
F |
4 |
GO:0004096 |
4 |
| Thioredoxin-disulfide reductase activity |
F |
3 |
GO:0004791 |
2 |
| Peroxiredoxin activity |
F |
5 |
GO:0051920 |
2 |
| Thioredoxin peroxidase activity |
F |
4 |
GO:0008379 |
1 |
| Glutathione peroxidase activity |
F |
4 |
GO:0004602 |
1 |
|
Secretion and polysaccharide production |
|
|
||
| Polysaccharide metabolic process |
P |
4 |
GO:0005976 |
21 |
| Polysaccharide biosynthetic process |
P |
6 |
GO:0000271 |
13 |
| Lipopolysaccharide biosynthetic process |
P |
6 |
GO:0009103 |
3 |
| Extracellular polysaccharide metabolic process |
P |
6 |
GO:0046379 |
2 |
| Secretion |
P |
5 |
GO:0046903 |
8 |
| Exocytosis |
P |
6 |
GO:0006887 |
4 |
| Vesicle docking involved in exocytosis |
P |
5 |
GO:0006904 |
3 |
| Vesicle-mediated transport |
P |
5 |
GO:0016192 |
38 |
|
Adhesion and recognition |
|
|
||
| Cell adhesion |
P |
3 |
GO:0007155 |
4 |
| Receptor activity |
F |
4 |
GO:0004872 |
34 |
| G-protein coupled receptor protein signaling pathway |
P |
5 |
GO:0007186 |
18 |
| Cell communication | P | 3 | GO:0007154 | 13 |