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. 2014 Apr 15;9(4):e94277. doi: 10.1371/journal.pone.0094277

Table 2. Selected DEGs between the C and P libraries.

Funtional group Unigene ID Gene annotation TPM-C TPM-P Log2Ratio (C/P)
Protein kinases
Unigene 9485_A CBL-interacting protein kinase 2.99 12.87 2.11
CL2201. Contig1_3 CBL-interacting protein kinase 25.9 59.45 1.20
CL4525. Contig1_A threonine protein kinase 4.98 15.62 1.65
Unigene 2338_A threonine protein kinase 2.85 7.96 1.48
Unigene 14518_A serine/threonine-protein kinase 78.13 35.73 -1.13
Unigene 32052_3 receptor-like protein kinase 2.56 0.01 -8
Unigene 39297_A receptor-like protein kinase 2.13 0.01 -7.73
Unigene 52174_A receptor-like protein kinase 6.26 1.3 -2.27
CL2777. Contig2_3 receptor-like protein kinase 36.43 14.9 -1.29
CL6483. Contig1_3 receptor-like protein kinase 16.94 7.67 -1.14
Unigene 43240_A receptor-like protein kinase 76.71 38.19 -1.01
Unigene 21624_3 mitogen-activated protein kinase kinase kinase 7.26 1.59 -2.19
CL1583.Contig2_A mitogen-activated protein kinase kinase kinase 7.26 1.59 -2.19
Unigene 9581_3 mitogen-activated protein kinase 2 25.62 10.7 -1.26
Unigene 633_3 AMP-activated protein kinase 24.76 10.7 -1.21
Unigene 21618_3 calcineurin B-like protein-interacting protein kinase 25.33 12.01 -1.08
Unigene 10286_A phosphoenolpyruvate carboxylase kinase 0.57 4.63 3.02
Unigene 27156_3 pyruvate, phosphate dikinase 35.44 85.2 1.27
CL4464. Contig2_3 pyruvate kinase 85.82 29.36 -1.55
Unigene 50230_A histidine kinase 40.28 17.94 -1.67
Transcription factors
Unigene 30342_3 WRKY transcription factor 7 4.7 14.75 1.65
Unigene 10063_3 WRKY transcription factor 6–1 1.99 0.01 -7.64
Unigene 27699_3 MYC protein 14.23 47.74 1.75
CL7944. Contig1_3 NAC domain-containing protein 14.23 4.48 -1.67
Unigene 31521_3 NAC domain-containing protein 12.52 4.19 -1.58
Unigene 25674_3 transcription factor TCP20-like 13.66 33.7 1.30
CL7341. Contig1_3 transcription factor TCP20-like 45.26 16.92 -1.42
Unigene 22142_3 transcription factor TCP7-like 31.88 15.04 -1.08
Unigene 21994_3 DNA binding protein 6.55 14.32 1.13
Unigene 23673_3 transcription factor bZIP124 51.24 20.83 -1.29
Unigene 1336_3 transcription factor bZIP12 4.7 11.57 1.29
Unigene 28584_3 transcription factor UNE12 37.86 12.01 -1.66
CL8097. Contig1_A transcription factor UNE12 8.11 3.18 -1.35
CL5168. Contig1_3 transcription factor UNE12 12.95 5.35 -1.28
Flavonoids biosynthesis
CL93. Contig1_A UDP-glucose: glucosyltransferase 22.06 50.19 1.19
CL1676. Contig1_A Flavonol sulfotransferase-like protein 3.56 9.4 1.40
CL2370. Contig2_3 flavonoid 3′-hydroxylase 10.39 25.6 1.30
Unigene 1473_3 flavonoid 3′-hydroxylase 84.96 34.72 -1.29
Unigene 19573_A dihydroflavonol 4-reductase 1.14 17.65 3.95
LEA proteins
CL4558. Contig1_3 late embryogenesis abundant protein 5.84 12.73 1.12
Unigene 442_3 late embryogenesis abundant protein group 9 7.54 22.57 1.58
Heat shock proteins
Unigene 18824_A mitochondrial small heat shock protein 3.84 10.99 1.51
CL12936. Contig1_A heat shock protein 17.5 cytosolic class II 1.85 8.25 2.15
aquaporin
Unigene 39258_A aquaporin 1.71 9.69 2.50
Unigene 19242_A aquaporin 426.96 176.77 -1.27
Proline transporter
CL1109. Contig2_A proline transporter 7.54 27.34 1.86
Cold shock protein
Unigene 233_3 cold shock protein 11.53 58.44 2.34
low temperature-induced protein
Unigene 24454_A low temperature-induced protein 0.01 2.03 7.67
Dehydration-induced proteins
Unigene 922_A dehydration-induced proteins 10.67 21.99 1.04
universal stress protein
Unigene 25385_3 universal stress protein 93.22 263.56 1.50
Resistance protein
CL8753. Contig4_3 disease resistance protein 1.85 7.23 1.97
CL6875. Contig2_3 disease resistance protein 0.01 2.03 7.67
CL5118. Contig1_3 disease resistance protein 4.7 1.01 -2.22
Unigene 26781_3 natural resistance-associated macrophage protein 1.28 16.49 3.69
Unigene 28389_3 nematode resistance protein 36.86 77.68 1.08
defensin precursor
Unigene 26068_3 defensin precursor 20.92 87.08 2.06
chitinase
CL630. Contig2_3 class IV chitinase 3.7 67.84 4.20
CL5695. Contig1_A chitinase 6.4 41.8 2.71
Unigene 30551_3 class IV chitinase 13.52 6.08 -1.15
CL630. Contig3_3 class IV chitinase 60.91 27.63 -1.14

C represents the control group; P represents the PEG-treated group. The DEGs was selected through FDR ≤0.001 and |log2Ratio| ≥1.