Table 1. Categorization and abundance of RNA-seq reads from libraries of virus-free and ASGV-infected apple shoots.

Summary		Virus-free	ASGV-infected
Raw reads	Total numbers	7591038	7430421
Total clean reads	Total numbers	7502805	7331064
	Total % of raw reads	98.84	98.66
Total mapped reads	Total numbers	4231368	5011174
	Total % of clean reads	56.40	68.36
Unique match reads	Total numbers	2796881	3309972
	Total % of clean reads	37.28	45.15
Multi-position match reads	Total numbers	1434487	1701202
	Total % of clean reads	19.12	23.21
Total unmapped reads	Total numbers	3271437	2319890
	Total % of clean reads	43.60	31.64
Total mapped reads	Total numbers	31320	33094
	Total % of genes	54.58	57.67