Table 2.
Studied single nucleotide polymorphisms and p-value of the association between caries experience group in the Filipino families.
| Location | Marker number | Base Change | Gene Symbol | Gene Name | p-value |
|---|---|---|---|---|---|
| chr. X 129088939 | rs5977183 | C/G | 0.085 | ||
| chr. X 129202285 | rs6637685 | C/T | ELF4 | E74-like factor 4 (ets domain transcription factor) | 0.160 |
| chr. X 129232391 | rs209990 | A/G | 0.663 | ||
| chr. X 129607422 | rs6529430 | A/G | 0.389 | ||
| chr. X 129623643 | rs17305502 | G/T | 0.405 | ||
| chr. X 129749449 | rs6634795 | C/T | ENOX2 | ecto-NOX disulfide-thiol exchanger 2 | 0.132 |
| chr. X 130193804 | rs4074535 | A/G | ARHGAP36 | Rho GTPase activating protein 36 | 0.521 |
| chr. X 130331814 | rs5932861 | A/G | 0.832 | ||
| chr. X 130404369 | rs6637822 | C/G | IGSF1 | immunoglobulin superfamily, member 1 | 0.512 |
| chr. X 130413442 | rs10521765 | C/G | 0.101 | ||
| chr. X 130488944 | rs5932901 | C/T | 0.473 | ||
| chr. X 130492895 | rs2475412 | C/T | 0.649 | ||
| chr. X 130554291 | rs12556610 | A/G | 0.779 | ||
| chr. X 130669439 | rs4829728 | A/T | OR13H1 | olfactory receptor, family 13, subfamily H, member 1 | 0.483 |
| chr. X 130746838 | rs707254 | A/G | 0.454 | ||
| chr. X 130949827 | rs4830231 | C/T | LOC286467 | hypothetical LOC286467 | 0.512 |
| chr. X 131154139 | rs2748729 | A/G | MST4 | serine/threonine protein kinase MST4 | 0.034 |
| chr. X 131820147 | rs858618 | A/G | HS6ST2 | heparan sulfate 6-O-sulfotransferase 2 | 0.341 |
| chr. X 131894744 | rs7881124 | A/G | 0.177 | ||
| chr. X 131947668 | rs5977761 | G/T | 0.122 | ||
| chr. X 132285877 | rs242143 | C/T | 0.844 | ||
| chr. X 132547106 | rs5977872 | A/G | GPC4 | glypican 4 | 0.513 |
| chr. X 132566456 | rs11096369 | A/G | 0.263 | ||
| chr. X 132638098 | rs2106472 | A/G | 0.616 | ||
| chr. X 132942023 | rs1908817 | C/G | GPC3 | glypican 3 | 0.219 |
| chr. X 133030056 | rs2284125 | C/T | 0.232 | ||
| chr. X 133150848 | rs12558772 | A/G | 0.780 | ||
| chr. X 133242671 | rs5977959 | A/G | 0.800 | ||
| chr. X 133280911 | rs2312983 | C/T | 0.311 | ||
| chr. X 133561242 | rs6638230 | A/G | PHF6 | PHD finger protein 6 | 0.227 |
| chr. X 133571373 | rs2097778 | A/G | 0.427 | ||
| chr. X 133699960 | rs1982 | G/T | PLAC1 | placenta-specific 1 | 0.994 |
| chr. X 134176178 | rs5975493 | C/G | 0.733 | ||
| chr. X 134473551 | rs933383 | A/G | ZNF449 | zinc finger protein 449 | 0.601 |
| chr. X 134553458 | rs5930702 | C/G | 0.847 | ||
| chr. X 134584301 | rs6528247 | C/T | 0.699 | ||
| chr. X 135148483 | rs903143 | C/T | 0.033 | ||
| chr. X 135262632 | rs7061270 | C/T | FHL1 | Four and a half LIM domains 1 | 0.400 |
| chr. X 135268469 | rs5975695 | C/T | 0.650 | ||
| chr. X 135431358 | rs5930933 | C/T | GPR112 | G protein-coupled receptor 112 | 0.677 |
| chr. X 135445357 | rs5974594 | C/T | 0.672 | ||
| chr. X 135673047 | rs5930964 | A/C | 0.983 | ||
| chr. X 135706075 | rs5930970 | C/G | 0.747 | ||
| chr. X 135837778 | rs661426 | C/T | ARHGEF6 | Rac/Cdc42 guanine nucleotide exchange factor(GEF)6 | 0.565 |
| chr. X 135842871 | rs476774 | A/C | 0.758 | ||
| chr. X 136053904 | rs1190738 | A/C | 0.591 | ||
| chr. X 136225349 | rs5931073 | C/T | 0.156 | ||
| chr. X 136248929 | rs5931088 | A/C | 0.856 | ||
| chr. X 136396877 | rs5929821 | C/G | 0.188 | ||
| chr. X 136495205 | rs2840672 | A/G | 0.805 | ||
| chr. X 136571724 | rs5931158 | C/T | 0.029 | ||
| chr. X 136600502 | rs6635446 | C/T | 0.183 | ||
| chr. X 136699584 | rs12687601 | C/T | 0.017 | ||
| chr. X136738181 | rs4829893 | A/G | 0.012 | ||
| chr. X 136816568 | rs1324156 | A/T | 0.043 | ||
| chr. X 137038855 | rs5929862 | A/G | 0.356 | ||
| chr. X 137086064 | rs882448 | A/G | 0.933 | ||
| chr. X 137214310 | rs12556287 | C/G | 0.335 | ||
| chr. X 137273537 | rs5931325 | C/T | 0.152 | ||
| chr. X 137306790 | rs5974725 | C/T | 0.354 | ||
| chr. X 137329745 | rs5931353 | C/T | 0.390 | ||
| chr. X 137396573 | rs1361551 | A/G | 0.391 | ||
| chr. X 137409895 | rs5931378 | A/G | 0.265 | ||
| chr. X 137471351 | rs1487918 | G/T | 0.517 | ||
| chr. X 137848601 | rs5931483 | A/G | FGF13 | fibroblast growth factor 13 | 0.584 |
| chr. X 137927172 | rs12838463 | A/G | 0.883 | ||
| chr. X 137951029 | rs5931506 | C/T | 0.606 | ||
| chr. X 137996323 | rs5931514 | A/T | 0.954 | ||
| chr. X 138045552 | rs10856566 | A/T | 0.272 | ||
| chr. X 138057626 | rs4520317 | G/T | 0.764 | ||
| chr. X 138155474 | rs5931566 | G/T | 0.925 | ||
| chr. X 138236517 | rs5931572 | A/G | 0.045 | ||
| chr. X 138266294 | rs4829963 | C/T | 0.095 | ||
| chr. X 138270349 | rs5974804 | C/T | 0.063 | ||
| chr. X 138308908 | rs6634045 | C/T | 0.035 | ||
| chr. X 138615521 | rs371000 | C/T | F9 | coagulation factor IX | 0.711 |
| chr. X 138722200 | rs5907607 | A/G | MCF2 | MCF.2 cell line derived transforming sequence | 0.811 |
| chr. X 138967742 | rs2485724 | G/T | 0.869 | ||
| chr. X 139185642 | rs1886366 | A/G | 0.724 | ||
| chr. X 139295472 | rs439883 | C/T | 0.328 | ||
| chr. X 139492869 | rs6634148 | A/G | 0.328 | ||
| chr. X 139685339 | rs6634180 | A/G | 0.794 | ||
| chr. X 139757252 | rs5954063 | A/T | 0.71 | ||
| chr. X 139827513 | rs11095831 | A/T | 0.413 | ||
| chr. X 140027664 | rs5907093 | A/C | 0.045 | ||
| chr. X 140055547 | rs1565843 | T/C | 0.097 | ||
| chr. X 140230896 | rs1016824 | T/C | 0.223 | ||
| chr. X 140275485 | rs5907830 | C/G | LDOC1 | leucine zipper, down-regulated in cancer 1 | 0.303 |
| chr. X 140313609 | rs1099501 | A/G | 0.548 | ||
| chr. X 140371091 | rs845163 | G/A | 0.568 | ||
| chr. X 140407317 | rs5907882 | T/C | 0.673 | ||
| chr. X 140511790 | rs6636302 | A/G | 0.239 | ||
| chr. X 140544892 | rs5907945 | G/A | 0.589 | ||
| chr. X 140555282 | rs6654428 | G/A | 0.531 | ||
| chr. X 140828207 | rs916354 | C/G | 0.617 | ||
| chr. X 140895389 | rs5908052 | A/G | 0.545 | ||
| chr. X 141033351 | rs6636538 | A/G | 0.199 | ||
| chr. X 141127038 | rs5908097 | A/G | 0.564 | ||
| chr. X 141166965 | rs7056485 | C/T | 0.799 | ||
| chr. X 141181280 | rs5907230 | C/G | 1.000 | ||
| chr. X 141322841 | rs11796500 | A/G | 0.467 | ||
| chr. X 141488796 | rs5908311 | C/T | 0.757 | ||
| chr. X 141579534 | rs5954679 | C/T | 0.721 | ||
| chr. X 141616460 | rs1040474 | A/G | 0.744 | ||
| chr. X 141697312 | rs7891458 | A/G | 0.116 | ||
| chr. X 141765482 | rs6529043 | A/G | 0.762 | ||
| chr. X 141802685 | rs5908399 | A/G | 0.963 | ||
| chr. X 141923733 | rs7065033 | G/T | 0.727 | ||
| chr. X 141944963 | rs5907355 | A/C | 0.362 | ||
| chr. X 142087501 | rs5908491 | C/T | 0.855 | ||
| chr. X 142093305 | rs5908499 | A/T | 0.346 | ||
| chr. X 142125008 | rs4825150 | A/G | SPANXN4 | SPANX family, member N4 | 0.219 |
| chr. X 142241362 | rs5908569 | A/G | 0.295 | ||
| chr. X 142271947 | rs5908582 | C/T | 0.954 | ||
| chr. X 142420719 | rs2865521 | C/T | 0.751 | ||
| chr. X 142434889 | rs5955002 | A/G | 0.947 | ||
| chr. X 142456822 | rs5908648 | C/T | 0.561 | ||
| chr. X 142490526 | rs5955016 | C/T | 0.177 | ||
| chr. X 142517697 | rs5907426 | C/G | 0.009 | ||
| chr. X 142566176 | rs5955034 | C/T | 0.114 | ||
| chr. X 142637455 | rs2207580 | A/C | 0.718 | ||
| chr. X 142692263 | rs2073252 | G/T | 0.027 | ||
| chr. X 142720238 | rs12156770 | C/T | SLITRK4 | SLIT and NTRK-like family, member 4 | 0.426 |
| chr. X 142813456 | rs5908778 | C/T | SPANXN2 | SPANX family, member N2 | 0.217 |
| chr. X 142898144 | rs5953891 | A/C | 0.971 | ||
| chr. X 142966181 | rs237514 | C/T | UBE2NL | ubiquitin-conjugating enzyme E2N-like | 0.325 |
| chr. X 142994731 | rs237537 | A/T | 0.063 | ||
| chr. X 143031283 | rs1077314 | C/T | 0.184 |
Note: Markers with no gene identification are in an intergenic area. Bold form indicates p≤0.05.