Table 2.
Richness of similar function genes in selected clusters. For each cluster, hypergeometric P-values, corresponding GO terms, and also the actual number of genes of a particular function are indicated.
| CID | Total number of genes |
P-value/GO ID (From GOstats result) |
Some relevant GO terms (corresponding number of genes) (From SGD database) |
|---|---|---|---|
| 4 | 97 | 1.20E − 131/GO:0022626 (CC) 2.62E − 117/GO:0002181 (BP) 4.80E − 129/GO:0003735 (MF) |
Cytosolic ribosome (94), structural constituent of ribosome (94), cytoplasmic translation (93), ribosome (96) |
|
| |||
| 16 | 76 | 6.42E − 24/GO:0044391 (CC) 7.23E − 17/GO:0006412 (BP) |
Ribosomal subunit (37), structural molecule activity (38) |
|
| |||
| 19 | 73 | 3.29E − 23/GO:0030529 (CC) | Ribonucleoprotein complex (47), intracellular part (73) |
|
| |||
| 226 | 8 | 1.50E − 20/GO:0000788 (CC) 1.93E − 14/GO:0006333 (BP) |
Nuclear nucleosome (8), DNA bending complex (8) |
|
| |||
| 1 | 113 | 1.42E − 17/GO:0042254 (BP) | Cellular metabolic process (104), intracellular part (109) |
|
| |||
| 44 | 34 | 2.89E − 16/GO:0005840 (CC) | Cytosolic part (21), cytoplasm (34) |
|
| |||
| 35 | 44 | 3.35E − 16/GO:0010467 (BP) | Gene expression (41), primary metabolic process (43) |
|
| |||
| 85 | 17 | 4.76E − 14/GO:0044429 (CC) | Mitochondrial part (14), mitochondrion (16) |
|
| |||
| 155 | 11 | 6.28E − 14/GO:0051082 (MF) 4.97E − 13/GO:0006457 (BP) |
Protein folding (9), protein binding (11), cellular protein metabolic process (10) |
|
| |||
| 278 | 7 | 3.00E − 13/GO:0000502 (CC) | Proteasome complex (7), proteasome storage granule (5) |
|
| |||
| 87 | 16 | 5.26E − 13/GO:0005730 (CC) | Nucleolus (12), non-membrane-bounded organelle (14) |
|
| |||
| 107 | 14 | 1.97E − 12/GO:0007005 (BP) | Mitochondrion organization (12), cellular component organization (13) |
|
| |||
| 121 | 13 | 5.32E − 12/GO:0006094 (BP) | Glycolysis (7), generation of precursor metabolites and energy (9) |
|
| |||
| 442 | 5 | 1.55E − 11/GO:0022904 (BP) | Mitochondrial respiratory chain (5), oxidoreductase complex (5) |
|
| |||
| 173 | 10 | 1.56E − 11/GO:0006457 (BP) 2.58E − 08/GO:0051082 (MF) |
Protein folding (7), unfolded protein binding (5), protein binding (8) |
|
| |||
| 282 | 7 | 5.58E − 11/GO:0004298 (MF) | Modification-dependent protein catabolic process (7), roteasomal ubiquitin-independent protein catabolic process (5) |
|
| |||
| 71 | 15 | 5.90E − 11/GO:0005840 (CC) | Ribosome (13), ribonucleoprotein complex (14) |
|
| |||
| 725 | 3 | 1.61E − 09/GO:0003993 (MF) | Acid phosphatase activity (2) |
|
| |||
| 214 | 9 | 2.88E − 09/GO:0008121 (MF) | Hydrogen ion transmembrane transporter activity (5), single-organism metabolic process (7) |
|
| |||
| 736 | 3 | 4.03E − 09/GO:0004067 (MF) | Asparaginase activity (3) |
|
| |||
| 1092 | 3 | 2.26E − 08/GO:0015002 (MF) | Heme-copper terminal oxidase activity (3) |
|
| |||
| 270 | 7 | 2.32E − 08/GO:0015078 (MF) | Ion transmembrane transporter activity (6) |