Table 1. Sequences of HBV-specific primers, tags and adaptors used for ultra-deep pyrosequencing.
Position from EcoRI site | HBV specific target sequence | Tag sequences¶ | Adaptor sequences€ | |
PCR 1 | 1606 (+) [1606–1625] | 5′-GCATGGAGACCACCGTGAAC-3′ | No tag | No adaptor |
1974 (−) [1974–1955] | 5′GGAAAGAAGTCAGAAGGCAA-3′ | No tag | No adaptor | |
PCR 2 | 1653 (+) [1653–1672] | 5′-CGTATCGCCTCCCTCGCGCCATCAG-3′ | ACACGACGACT1 | CAT AAG AGG ACT CTT GGA CT |
ACACGTAGTAT2 | ||||
ACACTACTCGT3 | ||||
ACGACACGTAT4 | ||||
1959 (−) [1959–1940] | 5′-CTATGCGCCTTGCCAGCCCGCTCAG-3′ | No tag | GGC AAA AAC GAG AGT AAC TC |
Short specific sequences used to label the different samples: 1: sample #1; 2: sample #2; 3: sample #3; 4: sample #4.
Short specific sequence used to ligated onto the ends of the fragments. These adaptors provide priming sequences for both amplification and sequencing of the sample-library fragments.