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. 2014 Apr 16;9(4):e95377. doi: 10.1371/journal.pone.0095377

Table 1. Sequences of HBV-specific primers, tags and adaptors used for ultra-deep pyrosequencing.

Position from EcoRI site HBV specific target sequence Tag sequences Adaptor sequences
PCR 1 1606 (+) [1606–1625] 5′-GCATGGAGACCACCGTGAAC-3′ No tag No adaptor
1974 (−) [1974–1955] 5′GGAAAGAAGTCAGAAGGCAA-3′ No tag No adaptor
PCR 2 1653 (+) [1653–1672] 5′-CGTATCGCCTCCCTCGCGCCATCAG-3′ ACACGACGACT1 CAT AAG AGG ACT CTT GGA CT
ACACGTAGTAT2
ACACTACTCGT3
ACGACACGTAT4
1959 (−) [1959–1940] 5′-CTATGCGCCTTGCCAGCCCGCTCAG-3′ No tag GGC AAA AAC GAG AGT AAC TC

Short specific sequences used to label the different samples: 1: sample #1; 2: sample #2; 3: sample #3; 4: sample #4.

Short specific sequence used to ligated onto the ends of the fragments. These adaptors provide priming sequences for both amplification and sequencing of the sample-library fragments.