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. Author manuscript; available in PMC: 2015 May 1.
Published in final edited form as: Methods. 2013 Oct 16;67(1):20–27. doi: 10.1016/j.ymeth.2013.10.004

Figure 1.

Figure 1

Inputs and outputs of ShortStack.

A. Schematic showing possible inputs and outputs of a ShortStack analysis. Letters in colored circles indicate different types of files or data.

B. Required inputs and their outputs for analysis. Three possible input combinations are possible, depending on the requirements for adapter trimming and alignment. Letters in colored circles refer to file/data types in panel A.

C. Optional inputs. Letters in colored circles refer to file/data types in panel A.