Table 4.
Maker name | LBS group (population 1/population 2) |
SBS group (population 1/population 2) |
Allele frequency P-value | Genotype frequency P-value | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Allele frequency |
Genotype frequency |
Allele frequency |
Genotype frequency |
|||||||||
C10973S307_GA | 0.51/0.29 (A) | 0.49/0.71 (G) | 0.36/0.07 (AA) | 0.31/0.44 (GA) | 0.33/0.49 (GG) | 0.86/0.74 (A) | 0.14/0.26 (G) | 0.76/0.68 (AA) | 0.18/0.12 (GA) | 0.05/0.20 (GG) | 8.86e−06a/1.10 e−07a | 5.00 e−04/5.68 e−07a |
C6068S140_CA | 0.49/0.41 (A) | 0.51/0.59 (C) | 0.33/0.24 (AA) | 0.31/0.33 (CA) | 0.36/0.43 (CC) | 0.81/0.80 (A) | 0.19/0.20 (C) | 0.70/0.76 (AA) | 0.22/0.08 (CA) | 0.08/0.16 (CC) | 3.98 e−03/1.12 e−06a | 2.24 e−03/5.27 e−05 |
C13555S183_TG | 0.45/0.32 (G) | 0.55/0.68 (T) | 0.28/0.13 (GG) | 0.34/0.38 (TG) | 0.38/0.49 (TT) | 0.77/0.74 (G) | 0.23/0.26 (T) | 0.69/0.64 (GG) | 0.17/0.18 (TG) | 0.14/0.18 (TT) | 6.10 e−05/2.55 e−07a | 1.70 e−03/1.20 e−05a |
C17803S726_GA | 0.55/0.76 (A) | 0.45/0.24 (G) | 0.40/0.72 (AA) | 0.30/0.08 (GA) | 0.30/0.20 (GG) | 0.25/0.47 (A) | 0.75/0.53 (G) | 0.10/0.36 (AA) | 0.29/0.23 (GA) | 0.61/0.41 (GG) | 1.44 e−04/2.94 e−04 | 5.01 e−03/2.15 e−04 |
C7493S233_CT | 0.96/0.85 (C) | 0.04/0.15 (T) | 0.94/0.77 (CC) | 0.03/0.15 (CT) | 0.03/0.08 (TT) | 0.71/0.53 (C) | 0.29/0.47 (T) | 0.59/0.31 (CC) | 0.23/0.43 (CT) | 0.18/0.26 (TT) | 1.73 e−05a/2.75 e−05a | 8.39 e−04/4.33 e−04 |
aSignificant after Bonferroni correction.
For each marker, alleles or genotypes are indicated in parenthesis below their frequencies.