Table 1. Locations of predicted Kinase-NL genes in the P. patens genome.
Gene ID | |||||||
Scaffold | Location | Kinase | NBS | LRR | |||
PpKNL1 | 4 | 1738811 | - | 1743286 | Pp1s4_271V6.1 2) | Pp1s4_269V6.1 | |
PpKNL2 | 107 | 727824 | - | 731384 | Pp1s107_101V6.1 | Pp1s107_101V6.2 | Pp1s107_101V6.3 |
PpKNL3 | 113 | 993176 | - | 997774 | Pp1s113_185V6.1 1) | ||
PpKNL4 | 158 | 673509 | - | 677386 | Pp1s158_132V6.1 2) | Pp1s158_133V6.1 | |
PpKNL5 | 158 | 699611 | - | 703907 | Pp1s158_140V6.1 2) | Pp1s158_139V6.1 | |
PpKNL6 | 17 | 1526214 | - | 1532049 | Pp1s17_234V6.1 1) | ||
PpKNL7 | 17 | 1840397 | - | 1844127 | Pp1s17_276V6.1 | Pp1s17_276V6.2 | Pp1s17_277V6.1 |
PpKNL8 | 180 | 434595 | - | 437932 | Pp1s180_59V6.1 2) | Pp1s180_60V6 | |
PpKNL9 | 180 | 685108 | - | 691200 | Pp1s180_101V6.1 1) | ||
PpKNL10 | 2 | 1242958 | - | 1246400 | Pp1s2_244V6.1 | Pp1s2_245V6.1 | Pp1s2_246V6.1 |
PpKNL11 | 223 | 477323 | - | 482156 | Pp1s223_84V6.1 | Pp1s223_83V6.1 | Pp1s223_81V6.1 |
PpKNL12 | 37 | 146900 | - | 150243 | Pp1s37_18V6.1 2) | Pp1s37_19V6.1 | |
PpKNL13 | 37 | 325178 | - | 328605 | Pp1s37_60V6.1 2) | Pp1s37_59V6.2 | |
PpKNL15 | 396 | 165625 | - | 170945 | Pp1s396_25V6.1 2) | Pp1s396_28V6.1 | |
PpKNL16 | 40 | 1047192 | - | 1051275 | Pp1s40_165V6.1 2) | Pp1s40_166V6.1 | |
PpKNL17 | 508 | 639 | - | 6531 | Pp1s508_5V6.1 2) | Pp1s508_2V6.1 | |
PpKNL18 | 68 | 286024 | - | 289607 | Pp1s68_70V6.1 2) | Pp1s68_69V6.1 |
The numbers indicate the start of putative kinase domain regions and the end of LRR regions in the P. patens genome. Scaffold numbers and locations were obtained from the Phytozome database (Ver 9.1). PpKNL1 includes the PpC24 sequence (AB078154, [22]).
Annotated as a single sequence (kinase-NBS-LRR).
Annotated as a kinase-NBS sequence.