TABLE 1.
Ten most abundant proteins expressed by C. subvermispora during growth in media containing aspen wood on days 3, 5, and 7 by using LC-MS/MS
| Day | IDa | Putative function | Peptideb | emPAIc |
|---|---|---|---|---|
| 3 | 50297 | Peroxidase MnP | 7 | 63.78 |
| 118681 | Peptidase A1 | 8 | 29.61 | |
| 78979 | Hypothetical | 3 | 24.00 | |
| 50686 | Peroxidase MnP | 7 | 20.42 | |
| 117240 | Peptidase A1 | 8 | 7.31 | |
| 162360 | GH51 arabinofuranosidase | 11 | 6.93 | |
| 84544 | Aryl alcohol oxidase | 13 | 4.76 | |
| 94398 | Peroxidase MnP | 4 | 4.50 | |
| 49863 | Peroxidase MnP | 7 | 4.44 | |
| 86951 | Lipase | 12 | 4.20 | |
| 5 | 50297 | Peroxidase MnP | 8 | 94.48 |
| 79557 | GH5_5 endoglucanase-CBM1 | 4 | 35.75 | |
| 97858 | GH10 endoxylanase-CBM1 | 12 | 18.94 | |
| 78979 | Hypothetical | 3 | 10.25 | |
| 115988 | Peptidase A1 | 8 | 6.42 | |
| 21396 | CE15 glucuronoyl esterase | 8 | 6.15 | |
| 59733 | GH10 endoxylanase-CBM1 | 11 | 5.47 | |
| 89943 | GH7 exocellobiohydrolase-CBM1 | 8 | 5.26 | |
| 117240 | Peptidase A1 | 9 | 5.23 | |
| 86951 | Lipase | 12 | 5.03 | |
| 7 | 97858 | GH10 endoxylanase-CBM1 | 13 | 62.01 |
| 89943 | GH7 exocellobiohydrolase-CBM1 | 8 | 31.82 | |
| 79557 | GH5_5 endoglucanase-CBM1 | 4 | 23.34 | |
| 115988 | Peptidase A1 | 9 | 19.68 | |
| 50297 | Peroxidase MnP | 6 | 13.37 | |
| 111819 | GH12 endoglucanase | 3 | 13.10 | |
| 136606 | GH7 exocellobiohydrolase-CBM1 | 9 | 11.61 | |
| 85474 | AA9/GH61 polysaccharide monooxygenase | 4 | 11.13 | |
| 21396 | CE15 glucuronoyl esterase | 8 | 9.64 | |
| 82023 | GH45 endoglucanse V-like | 3 | 6.70 |
a
For protein identification (ID), detailed information is available via the JGI genome website (http://genome.jgi.doe.gov/Cersu1/Cersu1.home.html).
b
Unique peptide counts identified by LC-MS/MS.
c
emPAI is described in Materials and Methods.