TABLE 1.
Pepducin name | Fatty acid and peptide sequence | Peptide lengthb | Net charge | Isoelectric point | Hydrophobic moment | Mean hydrophobicity |
---|---|---|---|---|---|---|
F2Pal16 | Pal-KIHKKGMIKSSRPLRV | 16 | 5.1 | 12.44 | 0.67 | −0.78 |
F2Pal12 | Pal-KIHKKGMIKSSR | 12 | 4.1 | 11.79 | 0.62 | −1.20 |
F2Pal10 | Pal-KIHKKGMIKS | 10 | 3.1 | 10.98 | 0.30 | −0.91 |
F2Pal8 | Pal-KIHKKGMI | 8 | 2.1 | 10.80 | 0.52 | −0.55 |
F2Pal12K1→Q | Pal-QIHKKGMIKSSR | 12 | 3.1 | 11.72 | 0.58 | −1.16 |
F2Pal12K4→Q | Pal-KIHQKGMIKSSR | 12 | 3.1 | 11.72 | 0.56 | −1.16 |
F2Pal12K5→Q | Pal-KIHKQGMIKSSR | 12 | 3.1 | 11.72 | 0.59 | −1.16 |
F2Pal12K9→Q | Pal-KIHKKGMIQSSR | 12 | 3.1 | 11.72 | 0.60 | −1.16 |
F2Myr12 | Myr-KIHKKGMIKSSR | 12 | 4.1 | 11.79 | 0.62 | −1.20 |
F2Lau12 | Lau-KIHKKGMIKSSR | 12 | 4.1 | 11.79 | 0.62 | −1.20 |
F2-12 | KIHKKGMIKSSR | 12 | 5.1 | 11.80 | 0.62 | −1.20 |
F1Pal16 | Pal-KIHKQGMIKSSRPLRV | 16 | 4.1 | 12.51 | 0.55 | −0.70 |
Physicochemical parameters are calculated from the method described in reference 14.
Length is the number of amino acids.