TABLE 3.
Limits of detection of four real-time PCR assays and intra-assay precision results of 10-fold dilutions of HEV genotype 3 or 4 DNA plasmid controls tested in triplicate
DNA copy no.a | Assay A |
Assay B |
Assay C |
Assay D |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
No. of detected samples/total | Mean CT | SD | CV%b | Detected samples | Mean CT | SD | CV%b | No. of detected samples/total | Mean CT | SD | CV%b | No. of detected samples/total | Mean CT | SD | CV%b | |
HEV-3 | ||||||||||||||||
100,000 | 3/3 | 24.55 | 0.47 | 1.86 | 3/3 | 25.30 | 0.94 | 3.56 | 3/3 | 30.28 | 0.85 | 2.73 | 3/3 | 26.12 | 0.41 | 1.53 |
10,000 | 3/3 | 28.58 | 0.37 | 1.24 | 3/3 | 28.09 | 0.64 | 2.05 | 3/3 | 33.48 | 0.68 | 1.91 | 3/3 | 29.98 | 0.48 | 1.54 |
1,000 | 3/3 | 31.37 | 0.34 | 1.09 | 3/3 | 32.77 | 0.16 | 0.48 | 3/3 | 37.34 | 0.78 | 2.09 | 3/3 | 32.80 | 0.94 | 2.88 |
100 | 3/3 | 34.91 | 0.23 | 0.65 | 3/3 | 36.35 | 1.32 | 3.53 | 3/3 | 40.78 | 1.17 | 2.90 | 3/3 | 36.74 | 0.59 | 1.64 |
10 | 3/3 | 37.16 | 0.73 | 1.95 | 2/3 | 39.31 | 1.81 | 4.60 | 0/3 | 1/3 | 39.92 | |||||
HEV-4 | ||||||||||||||||
100,000 | 3/3 | 23.78 | 0.66 | 2.77 | 3/3 | 25.86 | 0.18 | 0.69 | 3/3 | 31.85 | 0.17 | 0.53 | 3/3 | 30.77 | 0.90 | 2.82 |
10,000 | 3/3 | 28.44 | 0.39 | 1.36 | 3/3 | 29.25 | 0.72 | 2.31 | 3/3 | 35.86 | 0.12 | 0.32 | 3/3 | 34.03 | 0.33 | 0.93 |
1,000 | 3/3 | 31.59 | 0.68 | 2.16 | 3/3 | 32.81 | 0.09 | 0.24 | 1/3 | 39.54 | 1/3 | 38.21 | ||||
100 | 3/3 | 34.53 | 0.56 | 1.64 | 3/3 | 36.24 | 0.58 | 1.53 | 0/3 | 0/3 | ||||||
10 | 3/3 | 37.36 | 0.13 | 0.35 | 2/3 | 40.22 | 0.51 | 1.26 | 0/3 | 0/3 |
Number of plasmid DNA copies per reaction.
CV%, coefficient of variation.