TABLE 1.

Identification number, epidemiological data, and total number of sequences obtained for each viral population^a

Identity no.	Sample name and pathotype	Type of sample	Date of collection (day/mo/yr)	Location	Total no. of sequencesb	No. of mapped sequences
4618/99	A/turkey/Italy/4618/1999, HPAI	Trachea	14/12/1999	VR	423,574	418,238
4828/99	A/turkey/Italy/4828/1999, HPAI	Lung, trachea	23/12/1999	VR	460,708	460,491
4827/99	A/turkey/Italy/4827/1999, HPAI	Lung, trachea	23/12/1999	VR	431,304	431,085
4749/99	A/turkey/Italy/4749/1999, HPAI	Intestine	21/12/1999	VR	544,596	541,929
4708/99	A/turkey/Italy/4708/1999, HPAI	Trachea	21/12/1999	VR	501,086	496,408
4911/99	A/chicken/Italy/4911/1999, HPAI	Intestine	27/12/1999	RO	386,926	378,252
4756/99	A/turkey/Italy/4756/1999, HPAI	Intestine	22/12/1999	NAc	463,704	413,277
2732/99	A/turkey/Italy/2732/1999, LPAI	Lung, trachea	03/08/1999	VR	533,706	533,293
3675/99	A/turkey/Italy/3675/1999, LPAI	Trachea	04/10/1999	VR	591,410	591,173
4295/99	A/turkey/Italy/4295/1999, LPAI	Lung	22/11/1999	VR	520,056	516,798
3283/99	A/turkey/Italy/3283/1999, LPAI	Lung, trachea	10/09/1999	VR	534,136	529,407
4829/99	A/turkey/Italy/4829/1999, LPAI	Lung, trachea	23/12/1999	VR	542,062	541,952
1744/99	A/turkey/Italy/1744/1999, LPAI	Lung, trachea	26/04/1999	VR	195,496	194,543

^aData were derived from clinical specimens using the Illumina deep-sequencing platform.

^bAfter removal of adapter and low-quality sequences.

^cNA, not available.