TABLE 3.

Large contigs^a assembled from all reads of each HPV-positive sample and their best hits in GenBank

Organ	Contig	Length (bp)	Best hitb and HPV type	Identity (%)	Coverage (%)
Vagina	SRR062364.hpv_contig_103	7,944	HQ537734, HPV52	99.9	100.0
Vagina	SRR062365.hpv_contig_1	7,940	HQ537734, HPV52	99.9	100.0
Vagina	SRR062073.hpv_contig_1	7,859	EF546471, HPV53	100.0	100.0
Vagina	SRR064532.hpv_contig_1	7,723	X74476, HPV34	99.9	100.0
Vagina	SRR064532.hpv_contig_2	7,446	U89349, HPV18	99.7	100.0
Skin	SRR062408.hpv_contig_1	7,143	Y15173, HPV75	98.5	99.9
Vagina	SRR062073.hpv_contig_3	6,581	EF202156, HPV45	99.9	100.0
Vagina	SRR060392.hpv_contig_4	5,318	EF546473, HPV53	100.0	100.0
Skin	SRR062412.hpv_contig_2	5,148	Y15173, HPV75	98.4	100.0

^aContigs of >5,000 bp are included.

^bThe GenBank accession number for the best hit is given.