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| OMSSA |
||||||
|---|---|---|---|---|---|---|
| SEQUEST | 0 | 1 | 2 | 3 | 4 | |
| max missed cleavage sites | 1 | 1 | 1 | 1 | 1 | 1 |
| precursor mass tolerance (Da) | 3.0 | 3.0 | 1.5 | 2.0 | 1.5 | 1.5 |
| fragment mass tolerance (Da) | 1.0 | 1.0 | 0.5 | 0.8 | 0.5 | 1.0 |
| precursor ion search type | mono | avg | avg | avg | mono | avg |
| fragment ion search type | mono | mono | mono | avg | mono | mono |
| mass tolerance charge scaling | N/A | none | none | none | none | linear |
