Table 2.
Functional Annotations in RhesusBase.
| Entries |
|||
|---|---|---|---|
| Categories | v1a | v2 | |
| DNA | SNP | 5,682,738 | 20,327,025 |
| RNA | mRNA expression profile | 1,330,884 | 5,682,934 |
| PA site | 0 | 1,184,140 | |
| Alternative splicing | 0 | 481,865 | |
| RNA editing | 0 | 1,369,446 | |
| miRNA expression profile | 0 | 9,395 | |
| Regulation | TFBS | 174,805 | 28,771,628 |
| Chromatin interaction | 0 | 493,236 | |
| miRNA-binding site | 15,909 | 104,041 | |
| Sum | 7,204,336 | 58,423,710 | |
aStatistics of the functional annotations archived in the previous (v1) and current version of RhesusBase (v2) is summarized. From highly selected and processed NGS data sets, a total of 58,423,710 functional records were generated and incorporated in RhesusBase2 (v2), representing approximately one order of magnitude more NGS annotation entries compared with the previous version (v1).