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. 2014 Apr 22;12(4):e1001843. doi: 10.1371/journal.pbio.1001843

Figure 2. The level 2 representative network shows more detailed subgroupings.

Figure 2

The same network as in Figure 1 except that it is visualized at a higher stringency threshold, i.e., E-value≤1×10−25. Coloring is the same as in Figure 1. The 15,070 edges depicted in the figure have a median percent sequence identity of 38% over 212 residues. As with level 1 subgroups, clusters are designated as level 2 subgroups if there are at least 50 member sequences in that cluster.