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. 2014 Apr 22;9(4):e95917. doi: 10.1371/journal.pone.0095917

Table 4. Gene ontology terms correlated to demyelination as revealed by Gene Set Enrichment Analysis.

Gene ontology terms(biological process) Size(N) Gene symbols Normalizedenrichmentscore p-value
Gene ontology terms positively correlated with Luxol fast blue -negative white matter area (myelin-loss)
Viral reproduction 5 CALCOCO2, CD81, TOP2A, CCL2, HBXIP 1.71 0.0099
Viral infectious cycle 4 CD81, TOP2A, CCL2, HBXIP 1.65 0.0224
Viral reproductive process 4 CD81, TOP2A, CCL2, HBXIP 1.65 0.0224
Mitotic cell cycle 9 TPX2, KIF23, CDKN1A, BTG3, SMC4, NEK6, CDKN2C, AFAP1L2, CDK2AP1 1.62 0.0358
Humoral immune response 4 BLNK, PSMB10, CCL2, LY86 1.58 0.0106
Regulation of protein metabolic process 7 TIMP1, IRAK3, CD81, TLR3, DNAJC1, CCND2, TLR1 1.43 0.0395
Gene ontology terms negatively correlated with Luxol fast blue -negative white matter area (myelin-loss)
Generation of precursor metabolites and energy 5 DDO, PPOX, GSK3B, ALDH5A1, COX17 −1.30 0.0396

CDKN2C = cyclin-dependent kinase inhibitor 2C; AFAP1L2 = actin filament associated protein 1-like 2; ALDH5A1 = aldehyde dehydrogenase 5 family, member A1; BLNK = B-cell linker; BTG3 = BTG family, member 3; CALCOCO2 = calcium binding and coiled-coil domain 2; CCL2 = chemokine (C-C motif) ligand 2; CCND2 = cyclin D2; CD81 = CD81 molecule; CDK2AP1 = CDK2-associated protein 1; CDKN1A = cyclin-dependent kinase inhibitor 1A; COX17 = cytochrome c oxidase, subunit XVII assembly protein homolog; DDO = D-aspartate oxidase; DNAJC1 = DnaJ (Hsp40) homolog, subfamily C, member 1; GSK3B = glycogen synthase kinase 3 beta; HBXIP = hepatitis B virus x interacting protein; IRAK3 = interleukin-1 receptor-associated kinase 3; KIF23 = kinesin family member 23; LY86 = lymphocyte antigen 86; NEK6 = NIMA (never in mitosis gene a)-related kinase 6; PPOX = protoporphyrinogen oxidase; PSMB10 = proteasome (prosome, macropain) subunit, beta type, 10; SMC4 = structural maintenance of chromosomes 4; TIMP1 = tissue inhibitor of metalloproteinase 1; TLR1 = toll-like receptor 1; TLR3 = toll-like receptor 3; TOP2A = topoisomerase (DNA) II alpha 170 kDa; TPX2 = TPX2, microtubule-associated, homolog.