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. 2014 Apr 16;8:45. doi: 10.3389/fncom.2014.00045

Table 1.

Biochemical parameters of the astrocyte network model.

Symbol Description Value Units
IP3R KINETICS
d1 IP3 binding affinity 0.13 μM
O2 Inactivating Ca2+ binding rate 0.2 μM−1s−1
d2 Inactivating Ca2+ binding affinity 1.049 μM
d3 IP3 binding affinity (with Ca2+ inactivation) 0.9434 μM
d5 Activating Ca2+ binding affinity 0.08234 μM
CALCIUM FLUXES
CT Total ER Ca2+ content 2 μM
ρA ER-to-cytoplasm volume ratio 0.185
ΩC Maximal Ca2+ release rate by IP3Rs 6 s−1
ΩL Maximal Ca2+ leak rate 0.11 s−1
OP Maximal Ca2+ uptake rate 0.9 μM s−1
KP Ca2+ affinity of SERCA pumps 0.05 μM
IP3 PRODUCTION
Oδ Maximal rate of IP3 production by PLCδ 0.7 μM s−1
Kδ Ca2+ affinity of PLCδ 0.1 μM
κδ Inhibiting IP3 affinity of PLCδ 1.5 μM
IP3 DEGRADATION
Ω5P Maximal rate of IP3 degradation by IP-5P 0.21 s−1
O3K Maximal rate of IP3 degradation by IP3−3K 4.5 μM s−1
KD Ca2+ affinity of IP3-3K 1 μM
K3K IP3 affinity of IP3-3K 0.7 μM
IP3 DIFFUSION
F GJC IP3 permeability (linear) 2 s−1
GJC IP3 permeability (non–linear) 2 μM s−1
Iθ Threshold IP3 gradient for diffusion 0.3 μM
ωI Scaling factor of diffusion 0.05 μM
Ibias IP3 bias 2 μM
SIMULATION
T Simulation time 200 s
ts Stimulation time 200 s

The full model equations are given in Supplementary Material S1.