Table 1.
Biochemical parameters of the astrocyte network model.
Symbol | Description | Value | Units |
---|---|---|---|
IP3R KINETICS | |||
d1 | IP3 binding affinity | 0.13 | μM |
O2 | Inactivating Ca2+ binding rate | 0.2 | μM−1s−1 |
d2 | Inactivating Ca2+ binding affinity | 1.049 | μM |
d3 | IP3 binding affinity (with Ca2+ inactivation) | 0.9434 | μM |
d5 | Activating Ca2+ binding affinity | 0.08234 | μM |
CALCIUM FLUXES | |||
CT | Total ER Ca2+ content | 2 | μM |
ρA | ER-to-cytoplasm volume ratio | 0.185 | – |
ΩC | Maximal Ca2+ release rate by IP3Rs | 6 | s−1 |
ΩL | Maximal Ca2+ leak rate | 0.11 | s−1 |
OP | Maximal Ca2+ uptake rate | 0.9 | μM s−1 |
KP | Ca2+ affinity of SERCA pumps | 0.05 | μM |
IP3 PRODUCTION | |||
Oδ | Maximal rate of IP3 production by PLCδ | 0.7 | μM s−1 |
Kδ | Ca2+ affinity of PLCδ | 0.1 | μM |
κδ | Inhibiting IP3 affinity of PLCδ | 1.5 | μM |
IP3 DEGRADATION | |||
Ω5P | Maximal rate of IP3 degradation by IP-5P | 0.21 | s−1 |
O3K | Maximal rate of IP3 degradation by IP3−3K | 4.5 | μM s−1 |
KD | Ca2+ affinity of IP3-3K | 1 | μM |
K3K | IP3 affinity of IP3-3K | 0.7 | μM |
IP3 DIFFUSION | |||
F | GJC IP3 permeability (linear) | 2 | s−1 |
GJC IP3 permeability (non–linear) | 2 | μM s−1 | |
Iθ | Threshold IP3 gradient for diffusion | 0.3 | μM |
ωI | Scaling factor of diffusion | 0.05 | μM |
Ibias | IP3 bias | 2 | μM |
SIMULATION | |||
T | Simulation time | 200 | s |
ts | Stimulation time | 200 | s |
The full model equations are given in Supplementary Material S1.