Table 2. Repetitive elements in the A. chrysaetos genome. Numbers indicate repeat size in bp and percentage of genome assembly (in parenthesis).

	Total	RepeatProteinMask	RepeatMasker	RepeatModeler	trf
	repeat size: bp (%)	repeat size: bp (%)	repeat size: bp (%)	repeat size: bp (%)	repeat size: bp (%)
SINEs	2,063,865 (0.13%)	NA	1,664,482 (0.11%)	773,136 (0.05%)	NA
LINEs	39,834,388 (2.57%)	22,041,715 (1.42%)	35,622,475 (2.30%)	28,613,532 (1.85%)	NA
LTRs	21,717,448 (1.40%)	2,619,141 (0.17%)	19,036,431 (1.23%)	17,744,753 (1.15%)	NA
DNAs	8,382,378 (0.54%)	256,301 (0.02%)	7,635,911 (0.49%)	1,412,454 (0.09%)	NA
Unknown	7,837,457 (0.51%)	0 (0.00%)	844,327 (0.05%)	6,993,212 (0.45%)	NA
Tandem repeats	14,577,786 (0.94%)	NA	588,197 (0.04%)	244,508 (0.02%)	14,109,713 (0.91%)
Total	92,021,614 (5.94%)	24,908,961 (1.61%)	64,751,314 (4.18%)	56,079,698 (3.62%)	14,109,713 (0.91%)

trf, Tandem Repeat Finder [46].