Table 2.

Analysis of Compartmentalization of Human Immunodeficiency Virus Type 1 env Between Cerebrospinal Fluid and Blood Plasma

Subject	Days of Sampling	Test of Compartmentalization					Compa
		FST			Snn	SM
		Hudson-Slatkin- Maddison	Slatkin	H Boos K n
CSF and blood plasma
P409	0	0	0	0	0	0	Yes
	15	0.424	0.424	0.424	0.692	0.683	No
	45	0	0	0	0	0	Yes
P487	0	0	0	0	0	0	Yes
	4	0.001	0.001	0.001	0.106	0.009	No
	11	0	0	0	0	0	Yes
P686	0	0	0	0	0	0.011	Yes
	7	0	0	0	0	0	Yes
	9	0	0	0	0	0	Yes
P839	0	0	0	0	0	0	Yes
	7	0	0	0	0	0	Yes
	51	0	0	0	0	0.008	Yes
Seminal and blood plasma
G1	0	0	0	0	0	0	Yes
	34	0	0	0	0	0	Yes
	48	0	0	0	0	0.075	No
G8	0	0.002	0.002	0.002	0	0	Yes
	34	0.243	0.243	0.243	0.041	0.092	No
	63	0.151	0.151	0.151	0.012	0.302	No
WA	0	0	0	0	0.003	0	Yes
	61	0.717	0.717	0.717	0.006	0.018	No
	84	0	0	0	0	0	Yes
	98	0.864	0.864	0.864	0.037	0.212	No
	105	0.2	0.2	0.2	0.003	0.138	No
	113	0.41	0.41	0.41	0.012	0.279	No
	119	0.818	0.818	0.818	0.047	0.376	No
	128	0.169	0.169	0.169	0.014	0.215	No
	133	0.013	0.013	0.013	0.009	0.096	No
	170	0.001	0.001	0.001	0.007	0.164	No
	198	0	0	0	0	0.002	Yes
WB	0	0.138	0.083	0.138	0.138	0.012	No
	122	0.35	0.778	0.35	0.35	1	No
	334	0.077	0.18	0.077	0.077	1	No
WE	0	0.582	0.582	0.582	0.817	0.834	No
	1341	0.025	0.025	0.025	0.001	0.003	Yes
	2071	0.46	0.46	0.46	0.923	1	No
WF	0	0	0	0	0	1	No
	366	0.006	0.006	0.006	0.086	0.012	No
	547	0	0	0	0	1	No
	912	0	0	0	0.038	0.002	Yes
	1096	0	0	0	0	0.013	Yes
L3	0	0.172	0.172	0.172	0.172	0.009	No
	28	0.001	0.001	0.001	0.001	0	Yes
	169	0.006	0.006	0.006	0.01	0	Yes
	195	0	0	0	0	0	Yes
L7	0	0	0	0	0	0	Yes
	35	0.035	0.035	0.035	0.024	0.005	Yes
	50	0.001	0.001	0.001	0	0	Yes
	98	0.028	0.028	0.028	0.078	0.052	No
M8	0	0	0	0	0	0.033	Yes
	320	0.35	0.35	0.35	0.154	0	No
	1093	0.004	0.004	0.004	0	0.001	Yes
P9	0	0	0	0	0	0	Yes
	9	1	1	1	0.142	0	No
	737	0	0	0	0	0	Yes
	1155	0	0	0	0	0	Yes
X3	0	0.604	0.1	0.604	0.604	0.036	No
	21	0.176	0.215	0.176	0.176	0.004	No
	70	0.509	0.012	0.509	0.509	0.274	No

Abbreviations: F_ST, Wright measure of population subdivision; SM, Slatkin-Maddison; Snn, nearest-neighbor statistic.

^a Sample is defined as compartmentalized (Comp) if all tests show a P value of < .05.