Table 1.
Thirty-one differentially expressed transcripts between the mammary gland of two cows with high milk protein and fat percentage and two cows with low protein and fat percentage
| Transcript symbol | NCBI gene ID | Description | log 2 fold change (high/low) | p value | FDR q value | Detected by |
|---|---|---|---|---|---|---|
|
SAA3 |
281474 |
Serum amyloid A3 |
-2.09 |
9.90E-11 |
1.47E-07 |
DEseq |
|
HEATR7B2 |
518808 |
HEAT repeat family member 7B2 |
3.49 |
8.36E-10 |
1.04E-06 |
DEseq |
|
C4BPA |
281651 |
Complement component 4 binding protein, alpha |
-1.57 |
9.20E-10 |
1.04E-06 |
DEseq |
|
TRIB3 |
538465 |
Tribbles homolog 3 |
-2.64 |
3.38E-08 |
2.63E-05 |
DEseq, Cuffdiff |
|
SESN2 |
509863 |
Sestrin 2 |
-3.01 |
4.08E-08 |
2.99E-05 |
DEseq, Cuffdiff |
|
CHAC1 |
505991 |
Cation transport regulator homolog 1 |
-2.86 |
8.62E-08 |
5.97E-05 |
DEseq, Cuffdiff |
|
HSPD1 |
511913 |
Heat shock 60 kD protein 1 |
-0.57 |
1.12E-07 |
7.35E-05 |
DEseq |
|
SLC25A38 |
512325 |
Solute carrier family 25 member 38 |
-0.70 |
1.57E-07 |
9.80E-05 |
DEseq |
|
NR4A1 |
528390 |
Nuclear receptor subfamily 4, group A, member 1 |
2.42 |
4.10E-07 |
0.000243 |
DEseq |
|
BMX |
531514 |
BMX non-receptor tyrosine kinase |
2.92 |
6.94E-07 |
0.000393 |
DEseq |
|
SAA1 |
616035 |
Serum amyloid A1 |
-5.84 |
9.99E-07 |
0.000541 |
DEseq, Cuffdiff |
|
ATF3 |
515266 |
Activating transcription factor 3 |
-2.70 |
1.24E-06 |
0.000641 |
DEseq, Cuffdiff |
|
RPL23A |
507168 |
Ribosomal protein L23a |
-5.31 |
1.88E-05 |
0.038988 |
DEseq, Cuffdiff |
|
CDH16 |
508777 |
Cadherin 16, KSP-cadherin |
-1.27 |
1.29E-06 |
0.000641 |
DEseq |
|
VEGFA |
281572 |
Vascular endothelial growth factor A |
-1.25 |
1.35E-06 |
0.000647 |
DEseq |
|
KRT24 |
788424 |
Keratin 24 |
-1.83 |
6.96E-06 |
0.003095 |
DEseq |
|
EIF4G3 |
534618 |
Eukaryotic translation initiation factor 4 gamma, 3 |
-0.49 |
9.76E-06 |
0.004052 |
DEseq |
|
CDKN1A |
513497 |
Cyclin-dependent kinase inhibitor 1A |
-2.20 |
1.22E-05 |
0.004742 |
DEseq |
|
BOLA-DQB |
282495 |
Major histocompatibility complex, class II, DQ beta |
-6.92 |
1.21E-05 |
0.004742 |
DEseq |
|
ARID1B |
505229 |
AT rich interactive domain 1B (SWI1-like) |
-0.70 |
1.46E-05 |
0.005502 |
DEseq |
|
PTHLH |
286767 |
Parathyroid hormone-like hormone |
-0.76 |
1.69E-05 |
0.006194 |
DEseq |
|
ZC3H14 |
511473 |
Zinc finger CCCH-type containing 14 |
-0.65 |
1.99E-05 |
0.007094 |
DEseq |
|
H4 |
280691 |
Histone H4 |
-2.17 |
2.07E-05 |
0.007179 |
DEseq |
|
FAM71A |
616153 |
Family with sequence similarity 71, member A |
-1.0 |
2.53E-05 |
0.008504 |
DEseq |
|
THBS4 |
541281 |
Thrombospondin 4 |
-2.10 |
3.21E-05 |
0.010249 |
DEseq |
|
DDIT3 |
777788 |
DNA-damage-inducible transcript 3 |
-1.70 |
4.01E-05 |
0.012494 |
DEseq |
|
M-SAA3.2 |
618238 |
Mammary serum amyloid A3.2 |
-2.49 |
4.39E-05 |
0.013339 |
DEseq |
|
HIST1H2AC |
506900 |
Histone cluster 1, H2ac |
-2.01 |
5.54E-05 |
0.016423 |
DEseq |
|
FCAMR |
100297408 |
Fc receptor, IgA, IgM, high affinity |
-2.42 |
6.43E-05 |
0.018621 |
DEseq |
|
DNER |
516825 |
Delta/notch-like EGF repeat containing |
-1.0 |
8.29E-05 |
0.023475 |
DEseq |
| P4HA2 | 507327 | Prolyl 4-hydroxylase, alpha polypeptide II | -0.69 | 9.24E-05 | 0.025587 | DEseq |