Table 2. Summary of genotype data from significantly associated variants in the GWAS.
| SNP | Chr. | Position (bp) | N | Ref./non-ref. | MAF | MAF ca | MAF co | HWE | HWE ca | HWE co |
|---|---|---|---|---|---|---|---|---|---|---|
| Rs136617760 | 2 | 25 899 036 | 1058 | C/A | 0.11 | 0.07 | 0.15 | 7.5 × 10−93 | 2.2 × 10−39 | 2.0 × 10−52 |
| Rs42494357 | 13 | 71 782 488 | 1151 | G/A | 0.22 | 0.18 | 0.27 | 9.0 × 10−01 | 8.2 × 10−01 | 4.2 × 10−01 |
| Rs110465273 | 13 | 71 783 216 | 1151 | A/G | 0.22 | 0.18 | 0.27 | 9.0 × 10−01 | 8.2 × 10−01 | 4.2 × 10−01 |
| Rs42494342 | 13 | 71 784 332 | 1147 | G/A | 0.22 | 0.18 | 0.27 | 9.7 × 10−01 | 7.8 × 10−01 | 4.6 × 10−01 |
| Rs109809949 | 13 | 71 787 722 | 1148 | A/G | 0.22 | 0.18 | 0.26 | 10.0 × 10−01 | 8.0 × 10−01 | 5.2 × 10−01 |
| Rs109042660 | 13 | 71 788 784 | 1150 | G/A | 0.22 | 0.18 | 0.27 | 9.0 × 10−01 | 8.2 × 10−01 | 4.1 × 10−01 |
| Rs137562332 | 13 | 71 789 620 | 1151 | G/A | 0.22 | 0.18 | 0.27 | 9.0 × 10−01 | 8.2 × 10−01 | 4.2 × 10−01 |
| Rs132841890 | 13 | 71 791 844 | 1151 | A/G | 0.23 | 0.18 | 0.27 | 9.3 × 10−01 | 9.8 × 10−01 | 5.5 × 10−01 |
Abbreviations: bp, base pairs; ca, cases; Chr., chromosome; co, controls; GWAS, genome-wide association study; HWE, probability that the SNP is in Hardy–Weinberg equilibrium; MAF, minor allele frequency; N, number of genotyped samples; non-ref., non-reference (minor) allele on BeadChip; Position, Illumina BovineHD BeadChip SNP map position on the chromosome; Ref., reference (major) allele on BeadChip; SNP, single-nucleotide polymorphism GenBank accession number.