Table 1. The distribution of total and distinct tags.
| Summary | TM-1 | CSIL-35431 | CSIL-31010 | ||||||
| 15DPA | 20DPA | 25DPA | 15DPA | 20DPA | 25DPA | 15DPA | 20DPA | 25DPA | |
| Raw Data | 8374304 | 7231305 | 14267931 | 7461562 | 7389820 | 7298224 | 7471212 | 7007447 | 7203054 |
| Distinct Raw Tag | 389162 | 394430 | 494345 | 375999 | 371748 | 317147 | 283130 | 337525 | 386302 |
| Clean Tag | 8144920 | 7013147 | 14002534 | 7264426 | 7213791 | 7124575 | 7369012 | 6840101 | 7002766 |
| Distinct Clean Tag | 169700 | 177887 | 251173 | 182629 | 199257 | 148121 | 182184 | 172775 | 188639 |
| Unique Clean Tag Mapping to Gene | 3983215 | 3206328 | 6829327 | 3961228 | 3411249 | 3463314 | 3671014 | 3381955 | 3552566 |
| Total % of clean tag | 48.90% | 45.72% | 48.77% | 54.53% | 47.29% | 48.61% | 49.82% | 49.44% | 50.73% |
| Unique Distinct Clean Tag Mapping to Gene | 45380 | 40475 | 56172 | 53187 | 48453 | 41065 | 46720 | 45762 | 48147 |
| Total % of distinct tag | 26.74% | 22.75% | 22.36% | 29.12% | 24.32% | 27.72% | 25.64% | 26.49% | 25.52% |
| Unambiguous Tag-mapped Genes | 21498 | 20901 | 22594 | 21781 | 22325 | 20590 | 21900 | 22457 | 22811 |
| Percentage of reference genes | 57.32% | 55.73% | 60.24% | 58.07% | 59.53% | 54.90% | 58.39% | 59.88% | 60.82% |
Clean tags: tags after filtering dirty tags (low quality tags) from raw data.
Distinct tags: different kinds of tags.
Unambiguous tags: the clean tags after removing tags mapped to reference sequences from multiple genes.