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. Author manuscript; available in PMC: 2015 May 1.
Published in final edited form as: Chem Biol Drug Des. 2014 Mar 14;83(5):541–549. doi: 10.1111/cbdd.12266

Table 3.

List of all possible hydrogen bonding interactions as observed in the crystal structures for compounds 14. The hydrogen bond distance cutoff for the analysis is 3.6 Å or less.

NNRTI Donor Acceptor Distance Total Possible H bonds Uracil Conformation
4

NH backbone K103 CO uracil 3.3 2 Intermediate
NH uracil CO P236 backbone 3.4

3

NH backbone K103 CO uracil 3.2 2 aag
NH uracil CO P236 backbone 3.6

2

NH backbone K103 CO uracil 2.9 4 sag
NH uracil CO K103 backbone 2.8
NH uracil CO P236 backbone 3.2
NH3 sidechain K102 CO uracil 3.2

1

NH backbone K103 CO uraci 3.2 4 sag
NH uracil CO K103 backbone 3.3
NH uracil CO P236 backbone 3.4
NH3 sidechain K102 CO uracil 3.5