Table 4.
Identification of transcripts encoding putative transcription factors in cambium and differentiating xylem in C. japonica against Arabidopsis thaliana
| TF family | Description |
vs Arabidopsis |
|
|---|---|---|---|
| ESTs | % * | ||
| WRKY |
WRKY DNA-binding domain |
218 |
7.07 |
| MYB |
Myb-like DNA-binding domain |
167 |
5.41 |
| bHLH |
Helix-loop-helix DNA-binding domain |
162 |
5.25 |
| SNF2 |
ATP binding/DNA binding/helicase/nucleic acid binding |
150 |
4.86 |
| PHD |
Cys4--His--Cys3 zinc finger |
148 |
4.80 |
| Orphans |
antiporter/multidrug efflux pump/transporter |
135 |
4.38 |
| C3H |
Zinc finger, C-x8-C-x5-C-x3-H type |
134 |
4.34 |
| HB |
Homeobox domain |
131 |
4.25 |
| AP2-EREBP |
AP2 domain |
130 |
4.21 |
| C2H2 |
Zinc finger, C2H2 type |
117 |
3.79 |
| NAC |
No apical meristem (NAM) domain |
104 |
3.37 |
| MYB-related |
N-terminal myb-domain |
83 |
2.69 |
| SET |
SET domain |
76 |
2.46 |
| bZIP |
Basic leucine zipper (bZIP) motif |
72 |
2.33 |
| CCAAT |
NUCLEAR FACTOR Y, SUBUNIT A10 |
61 |
1.98 |
| ARF |
Auxin response factor |
56 |
1.82 |
| G2-like |
PRENYLATED RAB ACCEPTOR 1.G2 |
51 |
1.65 |
| HSF |
Heat shock factor |
49 |
1.59 |
| MADS |
DNA-binding and dimaerization domain |
47 |
1.52 |
| GRAS |
GRAS protein |
45 |
1.46 |
| C2C2-Dof |
Dof zinc finger |
45 |
1.46 |
| FHA |
Forkhead domain |
45 |
1.46 |
| ABI3VP1 |
ABI3/VP1 protein |
43 |
1.39 |
| Trihelix |
Trihelix DNA-binding domain |
42 |
1.36 |
| GNAT |
GCN5-related N-acetyltransferase (GNAT) family protein |
39 |
1.26 |
| Jumonji |
nucleic acid binding/zinc ion binding |
39 |
1.26 |
| mTERF |
mitochondrial transcription termination factor family protein |
38 |
1.23 |
| TRAF |
TRAF homology domain-containing protein |
36 |
1.17 |
| C2C2-GATA |
GATA zinc finger |
32 |
1.04 |
| LOB |
LATERAL ORGAN BOUNDARIES |
31 |
1.00 |
| AUX/IAA |
AUX/IAA family |
25 |
0.81 |
| DDT |
DDT domain-containing protein |
25 |
0.81 |
| FAR1 |
N-terminal microtubule binding motor domain |
25 |
0.81 |
| ARID |
AT-rich interaction domain |
23 |
0.75 |
| RWP-RK |
RWP-RK domain-containing protein |
23 |
0.75 |
| SBP |
SBP domain |
23 |
0.75 |
| CSD |
superoxide dismutase |
21 |
0.68 |
| ARR-B |
Arabidopsis response regulator B |
20 |
0.65 |
| DBP |
protein phosphatase 2C |
19 |
0.62 |
| TAZ |
TAZ zinc finger |
18 |
0.58 |
| zf-HD |
zf-HD class homeobox domain |
18 |
0.58 |
| BES1 |
BRI1-EMS supressor |
16 |
0.52 |
| E2F-DP |
DNA binding/protein heterodimerization |
16 |
0.52 |
| SWI/SNF-BAF60b |
SWIB complex BAF60b domain-containing protein |
16 |
0.52 |
| TUB |
structural constituent of cytoskeleton |
16 |
0.52 |
| C2C2-CO-like |
CCT motif |
15 |
0.49 |
| CPP |
copalyl pyrophosphate (CPP) of gibberellin biosynthesis |
15 |
0.49 |
| GRF |
Growth regulation factor1 |
15 |
0.49 |
| SWI/SNF-SWI3 |
chromatin binding/protein binding |
14 |
0.45 |
| GeBP |
DNA-binding storekeeper protein-related |
13 |
0.42 |
| Pseudo ARR-B |
Pseudo Arabidopsis response regulator B |
13 |
0.42 |
| TCP |
ATP binding/protein binding |
13 |
0.42 |
| Tify |
JASMONATE-ZIM-DOMAIN PROTEIN 6 |
13 |
0.42 |
| BSD |
BSD domain-containing protein |
12 |
0.39 |
| HMG |
HMG (high mobility group) domain |
12 |
0.39 |
| LUG |
LEUNIG gene |
12 |
0.39 |
| CAMTA |
Calmodulin-binding transcription activators |
11 |
0.36 |
| PLATZ |
Plant AT-rich sequnce and zinc-binding protein1 |
11 |
0.36 |
| Alfin-like |
Cys4 zinc finger and His/Cys3 |
10 |
0.32 |
| EIL |
Ethylene insensitivel (EIN3) |
10 |
0.32 |
| SRS |
Domain unknown function |
9 |
0.29 |
| IWS1 |
molecular_function unknown |
7 |
0.23 |
| OFP |
predicted nuclear localization signal |
7 |
0.23 |
| Sigma70-like |
DNA binding/DNA-directed RNA polymerase |
6 |
0.19 |
| BBR/BPC |
DNA binding |
5 |
0.16 |
| PBF-2-like |
peptidase/threonine-type endopeptidase |
5 |
0.16 |
| VOZ |
VOZ domain |
4 |
0.13 |
| LIM |
LIM domain |
3 |
0.10 |
| RB |
Retinoblastoma-associated protein B domain |
3 |
0.10 |
| Rcd1-like |
RADICAL-INDUCED CELL DEATH1 |
3 |
0.10 |
| SAP |
STERILE APETALA domain |
3 |
0.10 |
| Coactivator p15 |
transcriptional coactivator p15 (PC4) family protein |
2 |
0.06 |
| C2C2-YABBY |
YABBY transcription activator |
2 |
0.06 |
| S1Fa-like |
DNA binding protein S1FA |
2 |
0.06 |
| HRT |
nucleotide binding |
1 |
0.03 |
| LFY |
Floricaula/Leafy protein |
1 |
0.03 |
| MBF1 |
Multiprotein bridging factor 1 |
1 |
0.03 |
| MED6 |
RNA polymerase transcriptional regulation mediator-related |
1 |
0.03 |
| SOH1 | SOH1 domain | 1 | 0.03 |
*% is based on the 3085 Japanese cedar unique sequences with homologs in the PlnTFDB.