Table 2.
The number of SNPs or INDELs in three samples (upper part) and the annotating information for the variants (lower part)
| 607 | 303 | 305 | |
|---|---|---|---|
| SNP | 24894 | 18643 | 13649 |
| INDEL | 3968 | 2137 | 1207 |
| Mutation position | |||
| Downstream | 1284 | 827 | 536 |
| Exonic | 5128 | 4385 | 3548 |
| Exonic; splicing | 51 | 33 | 35 |
| Intergenic | 5385 | 4261 | 3188 |
| Intronic | 6246 | 3671 | 2622 |
| ncRNA_ exonic | 2273 | 2398 | 1903 |
| ncRNA_ splicing | 24 | 19 | 13 |
| ncRNA_UTR3 | 2 | 1 | 1 |
| ncRNA_UTR5 | 5 | 4 | 4 |
| Splicing | 41 | 24 | 12 |
| Upstream | 470 | 440 | 354 |
| Upstream; downstream | 51 | 32 | 25 |
| UTR3 | 7415 | 4168 | 2329 |
| UTR5 | 389 | 370 | 345 |
| UTR5; UTR3 | 14 | 11 | 9 |